2008 |
12 | EE | Zhibin Huang,
Yong Wu,
Joseph Robertson,
Liang Feng,
Russell L. Malmberg,
Liming Cai:
Fast and accurate search for non-coding RNA pseudoknot structures in genomes.
Bioinformatics 24(20): 2281-2287 (2008) |
2006 |
11 | EE | Jizhen Zhao,
Russell L. Malmberg,
Liming Cai:
Rapid ab initio RNA Folding Including Pseudoknots Via Graph Tree Decomposition.
WABI 2006: 262-273 |
10 | EE | Yinglei Song,
Chunmei Liu,
Russell L. Malmberg,
Liming Cai:
Phylogenetic Network Inferences Through Efficient Haplotyping.
WABI 2006: 68-79 |
9 | EE | Yinglei Song,
Chunmei Liu,
Xiuzhen Huang,
Russell L. Malmberg,
Ying Xu,
Liming Cai:
Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment.
IEEE/ACM Trans. Comput. Biology Bioinform. 3(4): 423-432 (2006) |
8 | EE | Yinglei Song,
Chunmei Liu,
Russell L. Malmberg,
Congzhou He,
Liming Cai:
Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots.
IJBRA 2(3): 289-304 (2006) |
2005 |
7 | EE | Yinglei Song,
Chunmei Liu,
Russell L. Malmberg,
Fangfang Pan,
Liming Cai:
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes.
CSB 2005: 223-234 |
6 | EE | Chunmei Liu,
Yinglei Song,
Russell L. Malmberg,
Liming Cai:
Profiling and Searching for RNA Pseudoknot Structures in Genomes.
International Conference on Computational Science (2) 2005: 968-975 |
5 | EE | Yinglei Song,
Chunmei Liu,
Xiuzhen Huang,
Russell L. Malmberg,
Ying Xu,
Liming Cai:
Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment.
WABI 2005: 376-388 |
4 | EE | Yinglei Song,
Jizhen Zhao,
Chunmei Liu,
Kan Liu,
Russell L. Malmberg,
Liming Cai:
RNA Structural Homology Search with a Succinct Stochastic Grammar Model.
J. Comput. Sci. Technol. 20(4): 454-464 (2005) |
3 | EE | Chunmei Liu,
Yinglei Song,
Russell L. Malmberg,
Liming Cai:
Profiling and Searching for RNA Pseudoknot Structures in Genomes.
T. Comp. Sys. Biology 2: 37-47 (2005) |
2004 |
2 | EE | Carolyn J. Lawrence,
Christian M. Zmasek,
R. Kelly Dawe,
Russell L. Malmberg:
LumberJack: a heuristic tool for sequence alignment exploration and phylogenetic inference.
Bioinformatics 20(12): 1977-1979 (2004) |
2003 |
1 | EE | Liming Cai,
Russell L. Malmberg,
Yunzhou Wu:
Stochastic modeling of RNA pseudoknotted structures: a grammatical approach.
ISMB (Supplement of Bioinformatics) 2003: 66-73 |