| 2008 |
| 13 | EE | Rune B. Lyngsø,
Yun S. Song,
Jotun Hein:
Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony.
RECOMB 2008: 463-477 |
| 12 | EE | Zhihong Ding,
Thomas Mailund,
Yun S. Song:
Efficient whole-genome association mapping using local phylogenies for unphased genotype data.
Bioinformatics 24(19): 2215-2221 (2008) |
| 2007 |
| 11 | EE | Dan Gusfield,
Vikas Bansal,
Vineet Bafna,
Yun S. Song:
A Decomposition Theory for Phylogenetic Networks and Incompatible Characters.
Journal of Computational Biology 14(10): 1247-1272 (2007) |
| 10 | EE | Yun S. Song,
Zhihong Ding,
Dan Gusfield,
Charles H. Langley,
Yufeng Wu:
Algorithms to Distinguish the Role of Gene-Conversion from Single-Crossover Recombination in the Derivation of SNP Sequences in Populations.
Journal of Computational Biology 14(10): 1273-1286 (2007) |
| 2006 |
| 9 | EE | Yun S. Song,
Zhihong Ding,
Dan Gusfield,
Charles H. Langley,
Yufeng Wu:
Algorithms to Distinguish the Role of Gene-Conversion from Single-Crossover Recombination in the Derivation of SNP Sequences in Populations.
RECOMB 2006: 231-245 |
| 8 | EE | Yun S. Song:
A Concise Necessary and Sufficient Condition for the Existence of a Galled-Tree.
IEEE/ACM Trans. Comput. Biology Bioinform. 3(2): 186-191 (2006) |
| 7 | EE | Yun S. Song,
Rune B. Lyngsø,
Jotun Hein:
Counting All Possible Ancestral Configurations of Sample Sequences in Population Genetics.
IEEE/ACM Trans. Comput. Biology Bioinform. 3(3): 239-251 (2006) |
| 2005 |
| 6 | EE | Yun S. Song,
Yufeng Wu,
Dan Gusfield:
Efficient computation of close lower and upper bounds on the minimum number of recombinations in biological sequence evolution.
ISMB (Supplement of Bioinformatics) 2005: 413-422 |
| 5 | EE | Yun S. Song,
Yufeng Wu,
Dan Gusfield:
Algorithms for Imperfect Phylogeny Haplotyping (IPPH) with a Single Homoplasy or Recombination Event.
WABI 2005: 152-164 |
| 4 | EE | Rune B. Lyngsø,
Yun S. Song,
Jotun Hein:
Minimum Recombination Histories by Branch and Bound.
WABI 2005: 239-250 |
| 3 | EE | Yun S. Song,
Jotun Hein:
Constructing Minimal Ancestral Recombination Graphs.
Journal of Computational Biology 12(2): 147-169 (2005) |
| 2003 |
| 2 | EE | Yun S. Song,
Jotun Hein:
Parsimonious Reconstruction of Sequence Evolution and Haplotype Blocks.
WABI 2003: 287-302 |
| 1 | EE | Gerton Lunter,
István Miklós,
Yun S. Song,
Jotun Hein:
An Efficient Algorithm for Statistical Multiple Alignment on Arbitrary Phylogenetic Trees.
Journal of Computational Biology 10(6): 869-889 (2003) |