David S. Wishart

2008
29	EE	David S. Wishart, David Arndt, Mark V. Berjanskii, Anchi Guo, Yi Shi, Savita Shrivastava, Jianjun Zhou, You Zhou, Guohui Lin: PPT-DB: the protein property prediction and testing database. Nucleic Acids Research 36(Database-Issue): 222-229 (2008)
28	EE	David S. Wishart, Craig Knox, Anchi Guo, Dean Cheng, Savita Shrivastava, Dan Tzur, Bijaya Gautam, Murtaza Hassanali: DrugBank: a knowledgebase for drugs, drug actions and drug targets. Nucleic Acids Research 36(Database-Issue): 901-906 (2008)
2007
27	EE	David S. Wishart, Russell Greiner: Session Introduction. Pacific Symposium on Biocomputing 2007: 112-114
26	EE	Craig Knox, Savita Shrivastava, Paul Stothard, Roman Eisner, David S. Wishart: Biospider: A Web Server for Automating Metabolome Annotations. Pacific Symposium on Biocomputing 2007: 145-156
25	EE	David S. Wishart: Current Progress in computational metabolomics. Briefings in Bioinformatics 8(5): 279-293 (2007)
24	EE	David S. Wishart, Dan Tzur, Craig Knox, Roman Eisner, Anchi Guo, Nelson Young, Dean Cheng, Kevin Jewell, David Arndt, Summit Sawhney, Chris Fung, Lisa Nikolai, Mike Lewis, Marie-Aude Coutouly, Ian J. Forsythe, Peter Tang, Savita Shrivastava, Kevin Jeroncic, Paul Stothard, Godwin Amegbey, David Block, David. D. Hau, James Wagner, Jessica Miniaci, Melisa Clements, Mulu Gebremedhin, Natalie Guo, Ying Zhang, Gavin E. Duggan, Glen D. MacInnis, Alim M. Weljie, Reza Dowlatabadi, Fiona Bamforth, Derrick Clive, Russell Greiner, Liang Li, Tom Marrie, Brian D. Sykes, Hans J. Vogel, Lori Querengesser: HMDB: the Human Metabolome Database. Nucleic Acids Research 35(Database-Issue): 521-526 (2007)
23	EE	Mark V. Berjanskii, David S. Wishart: The RCI server: rapid and accurate calculation of protein flexibility using chemical shifts. Nucleic Acids Research 35(Web-Server-Issue): 531-537 (2007)
2006
22		Brett Poulin, Roman Eisner, Duane Szafron, Paul Lu, Russell Greiner, David S. Wishart, Alona Fyshe, Brandon Pearcy, Cam Macdonell, John Anvik: Visual Explanation of Evidence with Additive Classifiers. AAAI 2006
21	EE	David S. Wishart, Craig Knox, Anchi Guo, Savita Shrivastava, Murtaza Hassanali, Paul Stothard, Zhan Chang, Jennifer Woolsey: DrugBank: a comprehensive resource for in silico drug discovery and exploration. Nucleic Acids Research 34(Database-Issue): 668-672 (2006)
20	EE	Mark V. Berjanskii, Stephen Neal, David S. Wishart: PREDITOR: a web server for predicting protein torsion angle restraints. Nucleic Acids Research 34(Web-Server-Issue): 63-69 (2006)
2005
19		Brett Poulin, Duane Szafron, Paul Lu, Russell Greiner, David S. Wishart, Roman Eisner, Alona Fyshe, Brandon Pearcy, Luca Pireddu: The Proteome Analyst Suite of Automated Function Prediction Tools. AAAI 2005: 1698-1699
18		Luca Pireddu, Brett Poulin, Duane Szafron, Paul Lu, David S. Wishart: Pathway Analyst--Automated Metabolic Pathway Prediction. CIBCB 2005: 243-250
17	EE	Paul Stothard, David S. Wishart: Circular genome visualization and exploration using CGView. Bioinformatics 21(4): 537-539 (2005)
16	EE	Paul Lu, Duane Szafron, Russell Greiner, David S. Wishart, Alona Fyshe, Brandon Pearcy, Brett Poulin, Roman Eisner, Danny Ngo, Nicholas Lamb: PA-GOSUB: a searchable database of model organism protein sequences with their predicted Gene Ontology molecular function and subcellular localization. Nucleic Acids Research 33(Database-Issue): 147-153 (2005)
15	EE	Paul Stothard, Gary H. Van Domselaar, Savita Shrivastava, Anchi Guo, Brian O'Neill, Joseph A. Cruz, Michael Ellison, David S. Wishart: BacMap: an interactive picture atlas of annotated bacterial genomes. Nucleic Acids Research 33(Database-Issue): 317-320 (2005)
14	EE	Rajarshi Maiti, Gary H. Van Domselaar, David S. Wishart: MovieMaker: a web server for rapid rendering of protein motions and interactions. Nucleic Acids Research 33(Web-Server-Issue): 358-362 (2005)
13	EE	Gary H. Van Domselaar, Paul Stothard, Savita Shrivastava, Joseph A. Cruz, Anchi Guo, Xiaoli Dong, Paul Lu, Duane Szafron, Russell Greiner, David S. Wishart: BASys: a web server for automated bacterial genome annotation. Nucleic Acids Research 33(Web-Server-Issue): 455-459 (2005)
2004
12	EE	Zhiyong Lu, Duane Szafron, Russell Greiner, Paul Lu, David S. Wishart, Brett Poulin, John Anvik, Cam Macdonell, Roman Eisner: Predicting subcellular localization of proteins using machine-learned classifiers. Bioinformatics 20(4): (2004)
11	EE	Nelson Young, Zhan Chang, David S. Wishart: GelScape: a web-based server for interactively annotating, manipulating, comparing and archiving 1D and 2D gel images. Bioinformatics 20(6): 976-978 (2004)
10	EE	David S. Wishart, Robert Yang, David Arndt, Peter Tang, Joseph A. Cruz: Dynamic cellular automata: a simple but powerful approach to cellular simulation. In Silico Biology 5: (2004)
9		Shan Sundararaj, Anchi Guo, Bahram Habibi-Nazhad, Melania Rouani, Paul Stothard, Michael Ellison, David S. Wishart: The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli. Nucleic Acids Research 32(Database-Issue): 293-295 (2004)
8		Duane Szafron, Paul Lu, Russell Greiner, David S. Wishart, Brett Poulin, Roman Eisner, Zhiyong Lu, John Anvik, Cam Macdonell, Alona Fyshe, David Meeuwis: Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations. Nucleic Acids Research 32(Web-Server-Issue): 365-371 (2004)
7		Rajarshi Maiti, Gary H. Van Domselaar, Haiyan Zhang, David S. Wishart: SuperPose: a simple server for sophisticated structural superposition. Nucleic Acids Research 32(Web-Server-Issue): 590-594 (2004)
6		Xiaoli Dong, Paul Stothard, Ian J. Forsythe, David S. Wishart: PlasMapper: a web server for drawing and auto-annotating plasmid maps. Nucleic Acids Research 32(Web-Server-Issue): 660-664 (2004)
2003
5		Leigh Willard, Anuj Ranjan, Haiyan Zhang, Hassan Monzavi, Robert F. Boyko, Brian D. Sykes, David S. Wishart: VADAR: a web server for quantitative evaluation of protein structure quality. Nucleic Acids Research 31(13): 3316-3319 (2003)
2000
4		Peter M. Hooper, Haiyan Zhang, David S. Wishart: Prediction of genetic structure in eukaryotic DNA using reference point logistic regression and sequence alignment. Bioinformatics 16(5): 425-438 (2000)
1997
3		David S. Wishart, S. Fortin, David R. Woloschuk, W. Wong, T. Rosborough, Gary H. Van Domselaar, Jonathan Schaeffer, Duane Szafron: A platform-independent graphical user interface for SEQSEE and XALIGN. Computer Applications in the Biosciences 13(5): 561-562 (1997)
1994
2		David S. Wishart, Robert F. Boyko, Leigh Willard, Frederic M. Richards, Brian D. Sykes: SEQSEE: a comprehensive program suite for protein sequence analysis. Computer Applications in the Biosciences 10(2): 121-132 (1994)
1		David S. Wishart, Robert F. Boyko, Brian D. Sykes: Constrained multiple sequence alignment using XALIGN. Computer Applications in the Biosciences 10(6): 687-688 (1994)

Coauthor Index

1	Godwin Amegbey	[24]
2	John Anvik	[8] [12] [22]
3	David Arndt	[10] [24] [29]
4	Fiona Bamforth	[24]
5	Mark V. Berjanskii	[20] [23] [29]
6	David Block	[24]
7	Robert F. Boyko	[1] [2] [5]
8	Zhan Chang	[11] [21]
9	Dean Cheng	[24] [28]
10	Melisa Clements	[24]
11	Derrick Clive	[24]
12	Marie-Aude Coutouly	[24]
13	Joseph A. Cruz	[10] [13] [15]
14	Gary H. Van Domselaar	[3] [7] [13] [14] [15]
15	Xiaoli Dong	[6] [13]
16	Reza Dowlatabadi	[24]
17	Gavin E. Duggan	[24]
18	Roman Eisner	[8] [12] [16] [19] [22] [24] [26]
19	Michael Ellison	[9] [15]
20	Ian J. Forsythe	[6] [24]
21	S. Fortin	[3]
22	Chris Fung	[24]
23	Alona Fyshe	[8] [16] [19] [22]
24	Bijaya Gautam	[28]
25	Mulu Gebremedhin	[24]
26	Russell Greiner	[8] [12] [13] [16] [19] [22] [24] [27]
27	Anchi Guo	[9] [13] [15] [21] [24] [28] [29]
28	Natalie Guo	[24]
29	Bahram Habibi-Nazhad	[9]
30	Murtaza Hassanali	[21] [28]
31	David. D. Hau	[24]
32	Peter M. Hooper	[4]
33	Kevin Jeroncic	[24]
34	Kevin Jewell	[24]
35	Craig Knox	[21] [24] [26] [28]
36	Nicholas Lamb	[16]
37	Mike Lewis	[24]
38	Liang Li	[24]
39	Guohui Lin (Guo-Hui Lin)	[29]
40	Paul Lu	[8] [12] [13] [16] [18] [19] [22]
41	Zhiyong Lu	[8] [12]
42	Glen D. MacInnis	[24]
43	Cam Macdonell	[8] [12] [22]
44	Rajarshi Maiti	[7] [14]
45	Tom Marrie	[24]
46	David Meeuwis	[8]
47	Jessica Miniaci	[24]
48	Hassan Monzavi	[5]
49	Stephen Neal	[20]
50	Danny Ngo	[16]
51	Lisa Nikolai	[24]
52	Brian O'Neill	[15]
53	Brandon Pearcy	[16] [19] [22]
54	Luca Pireddu	[18] [19]
55	Brett Poulin	[8] [12] [16] [18] [19] [22]
56	Lori Querengesser	[24]
57	Anuj Ranjan	[5]
58	Frederic M. Richards	[2]
59	T. Rosborough	[3]
60	Melania Rouani	[9]
61	Summit Sawhney	[24]
62	Jonathan Schaeffer	[3]
63	Yi Shi	[29]
64	Savita Shrivastava	[13] [15] [21] [24] [26] [28] [29]
65	Paul Stothard	[6] [9] [13] [15] [17] [21] [24] [26]
66	Shan Sundararaj	[9]
67	Brian D. Sykes	[1] [2] [5] [24]
68	Duane Szafron	[3] [8] [12] [13] [16] [18] [19] [22]
69	Peter Tang	[10] [24]
70	Dan Tzur	[24] [28]
71	Hans J. Vogel	[24]
72	James Wagner	[24]
73	Alim M. Weljie	[24]
74	Leigh Willard	[2] [5]
75	David R. Woloschuk	[3]
76	W. Wong	[3]
77	Jennifer Woolsey	[21]
78	Robert Yang	[10]
79	Nelson Young	[11] [24]
80	Haiyan Zhang	[4] [5] [7]
81	Ying Zhang	[24]
82	Jianjun Zhou	[29]
83	You Zhou	[29]