Richa Agarwala

2008
20	EE	Aleksandr Morgulis, George Coulouris, Yan Raytselis, Thomas L. Madden, Richa Agarwala, Alejandro A. Schäffer: Database indexing for production MegaBLAST searches. Bioinformatics 24(16): 1757-1764 (2008)
2007
19	EE	Sergey A. Shiryev, Jason S. Papadopoulos, Alejandro A. Schäffer, Richa Agarwala: Improved BLAST searches using longer words for protein seeding. Bioinformatics 23(21): 2949-2951 (2007)
18	EE	Jason S. Papadopoulos, Richa Agarwala: COBALT: constraint-based alignment tool for multiple protein sequences. Bioinformatics 23(9): 1073-1079 (2007)
17	EE	Alejandro A. Schäffer, Edward Stallknecht Rice, William Cook, Richa Agarwala: rh_tsp_map 3.0: end-to-end radiation hybrid mapping with improved speed and quality control. Bioinformatics 23(9): 1156-1158 (2007)
2006
16	EE	Aleksandr Morgulis, E. Michael Gertz, Alejandro A. Schäffer, Richa Agarwala: WindowMasker: window-based masker for sequenced genomes. Bioinformatics 22(2): 134-141 (2006)
15	EE	Aleksandr Morgulis, E. Michael Gertz, Alejandro A. Schäffer, Richa Agarwala: A Fast and Symmetric DUST Implementation to Mask Low-Complexity DNA Sequences. Journal of Computational Biology 13(5): 1028-1040 (2006)
2000
14		Richa Agarwala, Leslie G. Biesecker, Alejandro A. Schäffer: Inverse inbreeding coefficient problems with an application to linkage analysis of recessive diseases in inbred populations. Discrete Applied Mathematics 104(1-3): 3-44 (2000)
1999
13	EE	Richa Agarwala, Leslie G. Biesecker, Alejandro A. Schäffer: Inverse Inbreeding Coefficient Problems with an Application to Linkage Analysis of Recessive Diseases in Inbred Populations. SODA 1999: 840-841
12		Richa Agarwala, Vineet Bafna, Martin Farach, Mike Paterson, Mikkel Thorup: On the Approximability of Numerical Taxonomy (Fitting Distances by Tree Metrics). SIAM J. Comput. 28(3): 1073-1085 (1999)
1997
11	EE	Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, S. Muthukrishnan, Steven Skiena: Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model. RECOMB 1997: 1-2
10		Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, Steven Skiena: Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model. SODA 1997: 390-399
9		Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Sridhar Hannenhalli, Martin Farach, S. Muthukrishnan, Steven Skiena: Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model. Journal of Computational Biology 4(3): 275-296 (1997)
1996
8		Richa Agarwala, Vineet Bafna, Martin Farach, Babu O. Narayanan, Mike Paterson, Mikkel Thorup: On the Approximability of Numerical Taxonomy (Fitting Distances by Tree Metrics). SODA 1996: 365-372
7		Richa Agarwala, David Fernández-Baca: Simple Algorithms for Perfect Phylogeny and Triangulating Colored Graphs. Int. J. Found. Comput. Sci. 7(1): 11-22 (1996)
6		Richa Agarwala, David Fernández-Baca: Weighted Multidimensional Search and Its Application to Convex Optimization. SIAM J. Comput. 25(1): 83-99 (1996)
1995
5	EE	Richa Agarwala, David Fernández-Baca: Weighted Search in the Plane. Inf. Process. Lett. 54(2): 97-100 (1995)
4		Richa Agarwala, David Fernández-Baca, Giora Slutzki: Fast Algorithms for Inferring Evolutionary Trees. Journal of Computational Biology 2(3): 397-407 (1995)
1994
3		Richa Agarwala, David Fernández-Baca: A Polynomial-Time Algorithm for the Perfect Phylogeny Problem when the Number of Character States is Fixed. SIAM J. Comput. 23(6): 1216-1224 (1994)
1993
2		Richa Agarwala, David Fernández-Baca: A Polynomial-Time Algorithm for the Perfect Phylogeny Problem when the Number of Character States is Fixed FOCS 1993: 140-147
1992
1		Richa Agarwala, David Fernández-Baca: Solving the Lagrangian Dual when the Number of Constraints is Fixed. FSTTCS 1992: 164-175

Coauthor Index

1	Vineet Bafna	[8] [12]
2	Serafim Batzoglou	[9] [10] [11]
3	Leslie G. Biesecker	[13] [14]
4	William Cook	[17]
5	George Coulouris	[20]
6	Vlado Dancík	[9] [10] [11]
7	Scott E. Decatur	[9] [10] [11]
8	Martin Farach-Colton (Martin Farach)	[8] [9] [10] [11] [12]
9	David Fernández-Baca	[1] [2] [3] [4] [5] [6] [7]
10	E. Michael Gertz	[15] [16]
11	Sridhar Hannenhalli	[9] [10] [11]
12	Thomas L. Madden	[20]
13	Aleksandr Morgulis	[15] [16] [20]
14	S. Muthukrishnan (S. Muthu Muthukrishnan)	[9] [11]
15	Babu O. Narayanan	[8]
16	Jason S. Papadopoulos	[18] [19]
17	Mike Paterson	[8] [12]
18	Yan Raytselis	[20]
19	Edward Stallknecht Rice	[17]
20	Alejandro A. Schäffer	[13] [14] [15] [16] [17] [19] [20]
21	Sergey A. Shiryev	[19]
22	Steven Skiena	[9] [10] [11]
23	Giora Slutzki	[4]
24	Mikkel Thorup	[8] [12]

Colors in the list of coauthors