2008 |
20 | EE | Aleksandr Morgulis,
George Coulouris,
Yan Raytselis,
Thomas L. Madden,
Richa Agarwala,
Alejandro A. Schäffer:
Database indexing for production MegaBLAST searches.
Bioinformatics 24(16): 1757-1764 (2008) |
2007 |
19 | EE | Sergey A. Shiryev,
Jason S. Papadopoulos,
Alejandro A. Schäffer,
Richa Agarwala:
Improved BLAST searches using longer words for protein seeding.
Bioinformatics 23(21): 2949-2951 (2007) |
18 | EE | Jason S. Papadopoulos,
Richa Agarwala:
COBALT: constraint-based alignment tool for multiple protein sequences.
Bioinformatics 23(9): 1073-1079 (2007) |
17 | EE | Alejandro A. Schäffer,
Edward Stallknecht Rice,
William Cook,
Richa Agarwala:
rh_tsp_map 3.0: end-to-end radiation hybrid mapping with improved speed and quality control.
Bioinformatics 23(9): 1156-1158 (2007) |
2006 |
16 | EE | Aleksandr Morgulis,
E. Michael Gertz,
Alejandro A. Schäffer,
Richa Agarwala:
WindowMasker: window-based masker for sequenced genomes.
Bioinformatics 22(2): 134-141 (2006) |
15 | EE | Aleksandr Morgulis,
E. Michael Gertz,
Alejandro A. Schäffer,
Richa Agarwala:
A Fast and Symmetric DUST Implementation to Mask Low-Complexity DNA Sequences.
Journal of Computational Biology 13(5): 1028-1040 (2006) |
2000 |
14 | | Richa Agarwala,
Leslie G. Biesecker,
Alejandro A. Schäffer:
Inverse inbreeding coefficient problems with an application to linkage analysis of recessive diseases in inbred populations.
Discrete Applied Mathematics 104(1-3): 3-44 (2000) |
1999 |
13 | EE | Richa Agarwala,
Leslie G. Biesecker,
Alejandro A. Schäffer:
Inverse Inbreeding Coefficient Problems with an Application to Linkage Analysis of Recessive Diseases in Inbred Populations.
SODA 1999: 840-841 |
12 | | Richa Agarwala,
Vineet Bafna,
Martin Farach,
Mike Paterson,
Mikkel Thorup:
On the Approximability of Numerical Taxonomy (Fitting Distances by Tree Metrics).
SIAM J. Comput. 28(3): 1073-1085 (1999) |
1997 |
11 | EE | Richa Agarwala,
Serafim Batzoglou,
Vlado Dancík,
Scott E. Decatur,
Martin Farach,
Sridhar Hannenhalli,
S. Muthukrishnan,
Steven Skiena:
Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model.
RECOMB 1997: 1-2 |
10 | | Richa Agarwala,
Serafim Batzoglou,
Vlado Dancík,
Scott E. Decatur,
Martin Farach,
Sridhar Hannenhalli,
Steven Skiena:
Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model.
SODA 1997: 390-399 |
9 | | Richa Agarwala,
Serafim Batzoglou,
Vlado Dancík,
Scott E. Decatur,
Sridhar Hannenhalli,
Martin Farach,
S. Muthukrishnan,
Steven Skiena:
Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model.
Journal of Computational Biology 4(3): 275-296 (1997) |
1996 |
8 | | Richa Agarwala,
Vineet Bafna,
Martin Farach,
Babu O. Narayanan,
Mike Paterson,
Mikkel Thorup:
On the Approximability of Numerical Taxonomy (Fitting Distances by Tree Metrics).
SODA 1996: 365-372 |
7 | | Richa Agarwala,
David Fernández-Baca:
Simple Algorithms for Perfect Phylogeny and Triangulating Colored Graphs.
Int. J. Found. Comput. Sci. 7(1): 11-22 (1996) |
6 | | Richa Agarwala,
David Fernández-Baca:
Weighted Multidimensional Search and Its Application to Convex Optimization.
SIAM J. Comput. 25(1): 83-99 (1996) |
1995 |
5 | EE | Richa Agarwala,
David Fernández-Baca:
Weighted Search in the Plane.
Inf. Process. Lett. 54(2): 97-100 (1995) |
4 | | Richa Agarwala,
David Fernández-Baca,
Giora Slutzki:
Fast Algorithms for Inferring Evolutionary Trees.
Journal of Computational Biology 2(3): 397-407 (1995) |
1994 |
3 | | Richa Agarwala,
David Fernández-Baca:
A Polynomial-Time Algorithm for the Perfect Phylogeny Problem when the Number of Character States is Fixed.
SIAM J. Comput. 23(6): 1216-1224 (1994) |
1993 |
2 | | Richa Agarwala,
David Fernández-Baca:
A Polynomial-Time Algorithm for the Perfect Phylogeny Problem when the Number of Character States is Fixed
FOCS 1993: 140-147 |
1992 |
1 | | Richa Agarwala,
David Fernández-Baca:
Solving the Lagrangian Dual when the Number of Constraints is Fixed.
FSTTCS 1992: 164-175 |