Alexandros Stamatakis

2008
29	EE	Alexandros Stamatakis, Michael Ott: Exploiting Fine-Grained Parallelism in the Phylogenetic Likelihood Function with MPI, Pthreads, and OpenMP: A Performance Study. PRIB 2008: 424-435
28	EE	Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew D. Johnson, Daniel Janies, Alexandros Stamatakis: Large-scale phylogenetic analysis on current HPC architectures. Scientific Programming 16(2-3): 255-270 (2008)
2007
27	EE	Filip Blagojevic, Alexandros Stamatakis, Christos D. Antonopoulos, Dimitrios S. Nikolopoulos: RAxML-Cell: Parallel Phylogenetic Tree Inference on the Cell Broadband Engine. IPDPS 2007: 1-10
26	EE	Filip Blagojevic, Dimitrios S. Nikolopoulos, Alexandros Stamatakis, Christos D. Antonopoulos: Dynamic multigrain parallelization on the cell broadband engine. PPOPP 2007: 90-100
25	EE	Michael Ott, Jaroslaw Zola, Alexandros Stamatakis, Srinivas Aluru: Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L. SC 2007: 4
24	EE	Filip Blagojevic, Dimitrios S. Nikolopoulos, Alexandros Stamatakis, Christos D. Antonopoulos, Matthew Curtis-Maury: Runtime scheduling of dynamic parallelism on accelerator-based multi-core systems. Parallel Computing 33(10-11): 700-719 (2007)
23	EE	Alexandros Stamatakis, Filip Blagojevic, Dimitrios S. Nikolopoulos, Christos D. Antonopoulos: Exploring New Search Algorithms and Hardware for Phylogenetics: RAxML Meets the IBM Cell. VLSI Signal Processing 48(3): 271-286 (2007)
2006
22	EE	Alexandros Stamatakis: Phylogenetic models of rate heterogeneity: a high performance computing perspective. IPDPS 2006
21		David A. Bader, Usman Roshan, Alexandros Stamatakis: Computational Grand Challenges in Assembling the Tree of Life: Problems and Solutions. Advances in Computers 68: 128-179 (2006)
20	EE	Alexandros Stamatakis: RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22(21): 2688-2690 (2006)
2005
19	EE	Z. Du, Alexandros Stamatakis, F. Lin, Usman Roshan, Luay Nakhleh: Parallel Divide-and-Conquer Phylogeny Reconstruction by Maximum Likelihood. HPCC 2005: 776-785
18	EE	Alexandros Stamatakis: An Efficient Program for Phylogenetic Inference Using Simulated Annealing. IPDPS 2005
17	EE	Adam Arvelakis, Martin Reczko, Alexandros Stamatakis, Alkiviadis Symeonidis, Ioannis G. Tollis: Using Treemaps to Visualize Phylogenetic Trees. ISBMDA 2005: 283-293
16	EE	Alexandros Stamatakis, Michael Ott, Thomas Ludwig: RAxML-OMP: An Efficient Program for Phylogenetic Inference on SMPs. PaCT 2005: 288-302
15	EE	Maria Charalambous, Pedro Trancoso, Alexandros Stamatakis: Initial Experiences Porting a Bioinformatics Application to a Graphics Processor. Panhellenic Conference on Informatics 2005: 415-425
14	EE	Alexandros Stamatakis, Thomas Ludwig, Harald Meier: RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21(4): 456-463 (2005)
13	EE	Alexandros Stamatakis, Thomas Ludwig, Harald Meier: RAxML-II: a program for sequential, parallel and distributed inference of large phylogenetic trees. Concurrency and Computation: Practice and Experience 17(14): 1705-1723 (2005)
12	EE	Alexandros Stamatakis, Markus Lindermeier, Michael Ott, Thomas Ludwig, Harald Meier: DRAxML at home: a distributed program for computation of large phylogenetic trees. Future Generation Comp. Syst. 21(4): 725-730 (2005)
2004
11	EE	Alexandros Stamatakis, Thomas Ludwig, Harald Meier: Parallel Inference of a 10.000-Taxon Phylogeny with Maximum Likelihood. Euro-Par 2004: 997-1004
10	EE	Alexandros Stamatakis, Harald Meier, Thomas Ludwig: New Fast and Accurate Heuristics for Inference of Large Phylogenetic Trees. IPDPS 2004
9	EE	Alexandros Stamatakis, Thomas Ludwig, Harald Meier: A fast program for maximum likelihood-based inference of large phylogenetic trees. SAC 2004: 197-201
8	EE	Alexandros Stamatakis, Thomas Ludwig, Harald Meier: The AxML program family for maximum likelihood-based phylogenetic tree inference. Concurrency - Practice and Experience 16(9): 975-988 (2004)
2003
7	EE	Alexandros Stamatakis, Thomas Ludwig: Phylogenetic Tree Inference on PC Architectures with AxML/PAxML. IPDPS 2003: 157
6	EE	Alexandros Stamatakis, Markus Lindermeier, Michael Ott, Thomas Ludwig, Harald Meier: DAxML: A Program for Distributed Computation of Phylogenetic Trees Based on Load Managed CORBA. PaCT 2003: 538-548
2002
5	EE	Alexandros Stamatakis, Thomas Ludwig, Harald Meier, Marty J. Wolf: AxML: A Fast Program for Sequential and Parallel Phylogenetic Tree Calculations Based on the Maximum Likelihood Method. CSB 2002: 21-
4	EE	Alexandros Stamatakis, Thomas Ludwig, Harald Meier, Marty J. Wolf: Accelerating parallel maximum likelihood-based phylogenetic tree calculations using subtree equality vectors. SC 2002: 1-16
3	EE	Thomas Ludwig, Markus Lindermeier, Alexandros Stamatakis, Günther Rackl: Tool environments in CORBA-based medical high-performance computing. Future Generation Comp. Syst. 18(6): 841-847 (2002)
2		Günther Rackl, Thomas Ludwig, Markus Lindermeier, Alexandros Stamatakis: Efficiently building on-line tools for distributed heterogeneous environments. Scientific Programming 10(1): 67-74 (2002)
2001
1	EE	Thomas Ludwig, Markus Lindermeier, Alexandros Stamatakis, Günther Rackl: Tool Environments in CORBA-Based Medical High Performance Computing. PaCT 2001: 447-455

Coauthor Index

1	Srinivas Aluru	[25] [28]
2	Christos D. Antonopoulos	[23] [24] [26] [27]
3	Adam Arvelakis	[17]
4	David A. Bader	[21]
5	Filip Blagojevic	[23] [24] [26] [27]
6	Maria Charalambous	[15]
7	Matthew Curtis-Maury	[24]
8	Z. Du	[19]
9	Daniel Janies	[28]
10	Andrew D. Johnson	[28]
11	F. Lin	[19]
12	Markus Lindermeier	[1] [2] [3] [6] [12]
13	Thomas Ludwig	[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [16]
14	Harald Meier	[4] [5] [6] [8] [9] [10] [11] [12] [13] [14]
15	Luay Nakhleh	[19]
16	Dimitrios S. Nikolopoulos	[23] [24] [26] [27]
17	Michael Ott	[6] [12] [16] [25] [28] [29]
18	Günther Rackl	[1] [2] [3]
19	Martin Reczko	[17]
20	Usman Roshan	[19] [21]
21	Alkiviadis Symeonidis	[17]
22	Ioannis G. Tollis	[17]
23	Pedro Trancoso	[15]
24	Marty J. Wolf	[4] [5]
25	Jaroslaw Zola	[25] [28]

Colors in the list of coauthors