4. PSB 1999:
Big Island of Hawaii,
USA
Proceedings of the 4th Pacific Symposium on Biocomputing (PSB'99),
The Orchid at Mauna Lani,
Big Island of Hawaii,
USA,
January 4-9,
1999
Gene Expression and Genetic Networks
- Roland Somogyi, Hiroaki Kitano:
Gene Expression and Genetic Networks - Session Introduction.
3-4
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- Zoltan Szallasi:
Genetic Network Analysis in Light of Massively Parallel Biological Data Acquisition.
5-16
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- Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara:
Identification of Genetic Networks from a Small Number of Gene Expression Patterns Under the Boolean Network Model.
17-28
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- Ting Chen, Hongyu L. He, George M. Church:
Modeling Gene Expression with Differential Equations.
29-40
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- Patrik D'haeseleer, X. Wen, Stefanie Fuhrman, Roland Somogyi:
Linear Modeling of mRNA Expression Levels During CNS Development and Injury.
41-52
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- Robert S. Erb, George S. Michaels:
Sensitivity of Biological Models to Errors in Parameter Estimates.
53-64
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- P. J. E. Goss, Jean Peccoud:
Analysis of the Stabilizing Effect of ROM on the Genetic Network Controlling ColE1 Plasmid Replication.
65-76
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- Koji Kyoda, Hiroaki Kitano:
Simulation of Genetic Interaction for Drosophila Leg Formation.
77-89
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- Sylvia B. Nagl, James Freeman, Temple F. Smith:
Evolutionary Constraint Networks in Ligand-Binding Domains: An Information-Theoretic Approach.
90-101
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- Maria Samsonova, V. N. Serov:
NetWork: An Interactive Interface to the Tools for Analysis of Genetic Network Structure and Dynamics.
102-111
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- D. C. Weaver, Christopher T. Workman, Gary D. Stormo:
Modeling Regulatory Networks with Weight Matrices.
112-123
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Data Mining and Knowledge Discovery in Molecular Databases
- Janice I. Glasgow, Raymond T. Ng:
Data Mining and Knowledge Discovery in Molecular Databases - Session Introduction.
124-125
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- Robert Giegerich, Dirk Haase, Marc Rehmsmeier:
Prediction and Visualization of Structural Switches in RNA.
126-137
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- J. Hudak, M. A. McClure:
A Comparative Analysis of Computational Motif-Detection Methods.
138-149
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- Betty Lazareva-Ulitsky, David Haussler:
A Probabilistic Approach to a Consensus Multiple Alignment.
150-161
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- M. A. McClure, J. Kowlaski:
The Effects of Ordered-Series-of-Motifs Anchoring and Sub-Class Modeling on the Generation of HMMs Representing Highly Divergent Protein Sequences.
162-170
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- K. Murakami, T. Takagi:
Clustering and Detection of 5' Splice Sites of mRNA by k Weight-Matrices Model.
171-181
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- Christopher J. Savoie, Nobuhiro Kamikawaji, Takehiko Sasazuki, Satoru Kuhara:
Use of Bonsai Decision Trees for the Identification of Potential MHC Class I Peptide Epitope Motifs.
182-189
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- Shaobing Su, Diane J. Cook, Lawrence B. Holder:
Application of Knowledge Discovery to Molecular Biology: Identifying Structural Regularities in Proteins.
190-201
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- Tatsuhiko Tsunoda, Masao Fukagawa, Toshihisa Takagi:
Time and Memory Efficient Algorithm for Extracting Palindromic and Repetitive Subsequences in Nucleic Acid Sequences.
202-213
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- Hugh E. Williams:
Effective Query Filtering for Fast Homology Searching.
214-225
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Computer Modeling in Physiology:
From Cell to Tissue
Information Theoretic Approaches to Biology
- David L. Dowe, Klaus Prank:
Information Theoretic Approaches to Biology - Session Introduction.
252-253 BibTeX
- Olivier Delgrange, Max Dauchet, Eric Rivals:
Location of Repetitive Regions in Sequences By Optimizing A Compression Method.
254-265
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- T. Gregory Dewey:
MDL and the Statistical Mechanics of Protein Potentials.
266-277
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- Jacquelyn S. Fetrow, George Berg:
Using Information Theory to Discover Side Chain Rotamer Classes: Analysis of the Effects of Local Backbone Structure.
278-289
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- Eric Lemoine, David Merceron, Jean Sallantin, Engelbert Mephu Nguifo:
Improving the Efficiency of a User-Driven Learning System with Reconfigurable Hardware. Application to DNA Splicing.
290-301
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- Rolf Olsen, Terence Hwa, Michael Lässig:
Optimizing Smith-Waterman Alignments.
302-313
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- Guoqi Qian:
Computing Minimum Description Length for Robust Linear Regression Model Selection.
314-325
Electronic Edition (link) BibTeX
- Hiroshi Tanaka, Fengrong Ren, Toshitsugu Okayama, Takashi Gojobori:
Topology Selection in Unrooted Molecular Phylogenetic Tree By Minimum Model-Based Complexity Method.
326-337
Electronic Edition (link) BibTeX
Molecules to Maps:
Tools for Visualization & Interaction
- Thomas E. Ferrin, Eileen Kraemer:
Molecules to Maps: Tools for Visualization & Interaction - Session Introduction.
338-340
Electronic Edition (link) BibTeX
- S. Meiyappan, R. Raghavan, R. Viswanathan, Y. Yu, W. Lawton:
Proteinmorphosis: A Mechanical Model for Protein Conformational Changes.
341-353
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- Doanna Meads, Marc D. Hansen, Alex Pang:
ProtAlign: A 3-Dimensional Protein Alignment Assessment Tool.
354-367
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- Marc D. Hansen, Erik Charp, Suresh K. Lodha, Doanna Meads, Alex Pang:
PROMUSE: A System for Multi-Media Data Presentation of Protein Structural Alignments.
368-379
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- Greg B. Quinn, H.-P. Wang, D. Martinez, Philip E. Bourne:
Developing Protein Documentaries and Other Multimedia Presentations for Molecular Biology.
380-391
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- Wayne Salamonsen, Kevin Yee Chuen Mok, Prasanna R. Kolatkar, S. Subbiah:
BioJAKE: A Tool for the Creation, Visualization and Manipulation of Metabolic Pathways.
392-400
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- Michel F. Sanner, Bruce S. Duncan, C. J. Carrillo, Arthur J. Olson:
Integrating Computation and Visualization for Biomolecular Analysis: An Example Using Python and AVS.
401-412
Electronic Edition (link) BibTeX
Computer-Aided Drug Design
- Jürgen Bajorath, Teri E. Klein, Terry P. Lybrand, Jiri Novotny:
Computer-Aided Drug Design - Session Introduction.
413-414
Electronic Edition (link) BibTeX
- James R. Blinn, Douglas C. Rohrer, Gerald M. Maggiora:
Field-Based Similarity Forcing in Energy Minimization and Molecular Matching.
415-425
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- Djamal Bouzida, Sandra Arthurs, Anthony B. Colson, Stephan T. Freer, Daniel K. Gehlhaar, Veda Larson, Brock A. Luty, Paul A. Rejto, Peter W. Rose, Gennady Verkhivker:
Thermodynamics and Kinetics of Ligand-Protein Binding Studied with the Weighted Histogram Analysis Method and Simulated Annealing.
426-437
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- Peter Gund:
Empirical vs. "Rational" Methods of Discovering New Drugs.
438-443
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- Paul Labute:
Binary QSAR: A New Method for the Determination of Quantitative Structure Activity Relationships.
444-455
Electronic Edition (link) BibTeX
- Jonathan S. Mason, Daniel L. Cheney:
Ligand-Receptor 3-D Similarity Studies Using Multiple 4-Point Pharmacophores.
456-467
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- I. A. Shkel, S. Kim:
Two-Dimensional Reaction of Biological Molecules Studied by Weighted-Ensemble Brownian Dynamics.
468-479
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Protein Structure Prediction
Disorder in Protein Structure and Function
- C. Kissinger, A. Keith Dunker, Eugene I. Shakhnovich:
Disorder in Protein Structure and Function - Session Introduction.
517-519
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- S. J. Landry, N. K. Steede, A. M. Garaudy, K. Maskos, P. V. Viitanen:
Chaperonin Function Depends on Structure and Disorder in Co-Chaperonin Mobile Loops.
520-531
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- Diane J. Rodi, Lee Makowski:
Similarity Between the Sequences of Taxol-Selected Peptides and the Disordered Loop of the Anti-Apoptotic Protein, BCL-2.
532-541
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- Stuart I. Mathieson, Christopher J. Penkett, Lorna J. Smith:
Characterisation of Side-Chain Conformational Preferences in a Biologically Active But Unfolded Protein.
542-553
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- B. S. Nieslanik, E. C. Dietze, W. M. Atkins, I. Le Trong, E. Adman:
The Locally Denatured State of Glutathione S-Transferase A1-1: Transition State Analysis of Ligand-Dependent Formation of the C-Terminal Helix.
554-565 BibTeX
- R. B. Sessions, M. V. Hayes, A. J. Murray, A. R. Clarke, R. L. Brady:
One Sequence, Four Folds: Transitions Between an Ensemble of Metastable Folds for the N-Terminal Domain of CD2.
566-577 BibTeX
- W.-L. Shaiu, T. Hu, T.-S. Hsieh:
The Hydrophilic, Protease-Sensitive Terminal Domains of Eucaryotic DNA Topoisomerases Have Essential Intracellular Functions.
578-589 BibTeX
- X.-M. Yang, R. E. Georgescu, J.-H. Li, W.-F. Yu, Haierhan, M. L. Tasayco:
Recognition Between Disordered Polypeptide Chains from Cleavage of an a/B Domain: Self- versus Non-Self-Association.
590-600
Electronic Edition (link) BibTeX
Copyright © Sat May 16 23:35:19 2009
by Michael Ley (ley@uni-trier.de)
