| 2009 |
|---|
| 62 | EE | Yupeng Chen,
Bertil Schmidt,
Douglas L. Maskell:
A Reconfigurable Bloom Filter Architecture for BLASTN.
ARCS 2009: 40-49 |
| 2008 |
|---|
| 61 | EE | Chen Chen,
Bertil Schmidt,
Weiguo Liu,
Wolfgang Müller-Wittig:
GPU-MEME: Using Graphics Hardware to Accelerate Motif Finding in DNA Sequences.
PRIB 2008: 448-459 |
| 60 | EE | Huiliang Zhang,
Bertil Schmidt,
Wolfgang Müller-Wittig:
Accelerating BLASTP on the Cell Broadband Engine.
PRIB 2008: 460-470 |
| 59 | EE | A. Singh,
Chen Chen,
Weiguo Liu,
W. Mitchell,
Bertil Schmidt:
A Hybrid Computational Grid Architecture for Comparative Genomics.
IEEE Transactions on Information Technology in Biomedicine 12(2): 218-225 (2008) |
| 58 | EE | Tim Oliver,
Leow Yuan Yeow,
Bertil Schmidt:
Integrating FPGA acceleration into HMMer.
Parallel Computing 34(11): 681-691 (2008) |
| 2007 |
|---|
| 57 | | Jagath C. Rajapakse,
Bertil Schmidt,
L. Gwenn Volkert:
Pattern Recognition in Bioinformatics, Second IAPR International Workshop, PRIB 2007, Singapore, October 1-2, 2007, Proceedings
Springer 2007 |
| 56 | EE | Malcolm Yoke-Hean Low,
Weiguo Liu,
Bertil Schmidt:
A Parallel BSP Algorithm for Irregular Dynamic Programming.
APPT 2007: 151-160 |
| 55 | EE | Weiguo Liu,
Bertil Schmidt,
Gerrit Voss,
Wolfgang Müller-Wittig:
Molecular Dynamics Simulations on Commodity GPUs with CUDA.
HiPC 2007: 185-196 |
| 54 | EE | Weiguo Liu,
Wolfgang Müller-Wittig,
Bertil Schmidt:
Performance Predictions for General-Purpose Computation on GPUs.
ICPP 2007: 50 |
| 53 | EE | Timothy F. Oliver,
Leow Yuan Yeow,
Bertil Schmidt:
High Performance Database Searching with HMMer on FPGAs.
IPDPS 2007: 1-7 |
| 52 | EE | Adrianto Wirawan,
Kwoh Chee Keong,
Bertil Schmidt:
Parallel DNA Sequence Alignment on the Cell Broadband Engine.
PPAM 2007: 1249-1256 |
| 51 | EE | Yan Lin Aung,
Douglas L. Maskell,
Timothy F. Oliver,
Bertil Schmidt,
William Bong:
C-Based Design Methodology for FPGA Implementation of ClustalW MSA.
PRIB 2007: 11-18 |
| 50 | EE | Jimin Feng,
Samarjit Chakraborty,
Bertil Schmidt,
Weiguo Liu,
Unmesh D. Bordoloi:
Fast Schedulability Analysis Using Commodity Graphics Hardware.
RTCSA 2007: 400-408 |
| 49 | EE | Weiguo Liu,
Bertil Schmidt,
Gerrit Voss,
Wolfgang Müller-Wittig:
Streaming Algorithms for Biological Sequence Alignment on GPUs.
IEEE Trans. Parallel Distrib. Syst. 18(9): 1270-1281 (2007) |
| 48 | EE | Bertil Schmidt:
A survey of desktop grid applications for e-science.
IJWGS 3(3): 354-368 (2007) |
| 47 | EE | Feng Lin,
Heiko Schröder,
Bertil Schmidt:
Solving the Bottleneck Problem in Bioinformatics Computing: An Architectural Perspective.
VLSI Signal Processing 48(3): 185-188 (2007) |
| 46 | EE | Weiguo Liu,
Bertil Schmidt,
Wolfgang Müller-Wittig:
Performance Analysis of General-Purpose Computation on Commodity Graphics Hardware: A Case Study Using Bioinformatics.
VLSI Signal Processing 48(3): 209-221 (2007) |
| 45 | EE | John Paul Walters,
Xiandong Meng,
Vipin Chaudhary,
Timothy F. Oliver,
Leow Yuan Yeow,
Bertil Schmidt,
Darran Nathan,
Joseph I. Landman:
MPI-HMMER-Boost: Distributed FPGA Acceleration.
VLSI Signal Processing 48(3): 223-238 (2007) |
| 2006 |
|---|
| 44 | EE | Menaka Rajapakse,
Bertil Schmidt,
Vladimir Brusic:
Multi-Objective Evolutionary Algorithm for Discovering Peptide Binding Motifs.
EvoWorkshops 2006: 149-158 |
| 43 | EE | Weiguo Liu,
Bertil Schmidt,
Gerrit Voss,
Wolfgang Müller-Wittig:
GPU-ClustalW: Using Graphics Hardware to Accelerate Multiple Sequence Alignment.
HiPC 2006: 363-374 |
| 42 | EE | Weiguo Liu,
Bertil Schmidt,
Gerrit Voss,
A. Schroder,
Wolfgang Müller-Wittig:
Bio-sequence database scanning on a GPU.
IPDPS 2006 |
| 41 | EE | Timothy F. Oliver,
Bertil Schmidt,
Yanto Jakop,
Douglas L. Maskell:
Accelerating the Viterbi Algorithm for Profile Hidden Markov Models Using Reconfigurable Hardware.
International Conference on Computational Science (1) 2006: 522-529 |
| 40 | EE | Weiguo Liu,
Bertil Schmidt:
Parallel Pattern-Based Systems for Computational Biology: A Case Study.
IEEE Trans. Parallel Distrib. Syst. 17(8): 750-763 (2006) |
| 39 | EE | Weiguo Liu,
Bertil Schmidt:
Mapping of Hierarchical Parallel Genetic Algorithms for Protein Folding onto Computational Grids.
IEICE Transactions 89-D(2): 589-596 (2006) |
| 38 | EE | Timothy F. Oliver,
Bertil Schmidt,
Douglas L. Maskell,
Darran Nathan,
Ralf Clemens:
High-speed Multiple Sequence Alignment on a reconfigurable platform.
IJBRA 2(4): 394-406 (2006) |
| 37 | EE | Chunxi Chen,
Bertil Schmidt:
Constructing large suffix trees on a computational grid.
J. Parallel Distrib. Comput. 66(12): 1512-1523 (2006) |
| 2005 |
|---|
| 36 | EE | Jacop Yanto,
Timothy F. Oliver,
Bertil Schmidt,
Douglas L. Maskell:
Biological Sequence Analysis with Hidden Markov Models on an FPGA.
Asia-Pacific Computer Systems Architecture Conference 2005: 429-439 |
| 35 | EE | Chunxi Chen,
Bertil Schmidt:
Parallel Construction of Large Suffix Trees on a PC Cluster.
Euro-Par 2005: 1227-1236 |
| 34 | EE | Timothy F. Oliver,
Bertil Schmidt,
Douglas L. Maskell:
Hyper customized processors for bio-sequence database scanning on FPGAs.
FPGA 2005: 229-237 |
| 33 | EE | Timothy F. Oliver,
Bertil Schmidt,
Douglas L. Maskell,
Darran Nathan,
Ralf Clemens:
Multiple Sequence Alignment on an FPGA.
ICPADS (2) 2005: 326-330 |
| 32 | EE | Menaka Rajapakse,
Lonce L. Wyse,
Bertil Schmidt,
Vladimir Brusic:
Deriving Matrix of Peptide-MHC Interactions in Diabetic Mouse by Genetic Algorithm.
IDEAL 2005: 440-447 |
| 31 | EE | Weiguo Liu,
Bertil Schmidt:
A Case Study on Pattern-Based Systems for High Performance Computational Biology.
IPDPS 2005 |
| 30 | EE | Timothy F. Oliver,
Bertil Schmidt,
Douglas L. Maskell,
Achutavarrier Prasad Vinod:
A reconfigurable architecture for scanning biosequence databases.
ISCAS (5) 2005: 4799-4802 |
| 29 | EE | Timothy F. Oliver,
Bertil Schmidt,
Darran Nathan,
Ralf Clemens,
Douglas L. Maskell:
Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW.
Bioinformatics 21(16): 3431-3432 (2005) |
| 28 | EE | Tong Liu,
Bertil Schmidt:
Parallel RNA secondary structure prediction using stochastic context-free grammars.
Concurrency and Computation: Practice and Experience 17(14): 1669-1685 (2005) |
| 27 | EE | Chunxi Chen,
Bertil Schmidt:
An adaptive grid implementation of DNA sequence alignment.
Future Generation Comp. Syst. 21(7): 988-1003 (2005) |
| 2004 |
|---|
| 26 | EE | Chunxi Chen,
Bertil Schmidt:
Performance analysis of computational biology applications on hierarchical Grid systems.
CCGRID 2004: 426-433 |
| 25 | EE | Weiguo Liu,
Bertil Schmidt:
A Generic Parallel Pattern-Based System for Bioinformatics.
Euro-Par 2004: 989-996 |
| 24 | EE | Chunxi Chen,
Bertil Schmidt:
Load Balancing for Hierarchical Grid Computing: A Case Study.
HiPC 2004: 353-362 |
| 23 | EE | Weiguo Liu,
Bertil Schmidt:
A Tunable Coarse-Grained Parallel Algorithm for Irregular Dynamic Programming Applications.
HiPC 2004: 91-100 |
| 22 | EE | Timothy F. Oliver,
Bertil Schmidt:
High Performance Biosequence Database Scanning on Reconfigurable Platforms.
IPDPS 2004 |
| 21 | EE | Tong Liu,
Bertil Schmidt:
Parallel RNA Sequence-Structure Alignment.
IPDPS 2004 |
| 20 | EE | Bertil Schmidt,
Lin Feng,
Amey V. Laud,
Yusdi Santoso:
Development of distributed bioinformatics applications with GMP.
Concurrency - Practice and Experience 16(9): 945-959 (2004) |
| 19 | EE | Manfred Schimmler,
Bertil Schmidt,
Hans-Werner Lang:
A bit-serial floating-point unit for a massively parallel system on a chip.
Parallel Algorithms Appl. 19(2-3): 79-95 (2004) |
| 2003 |
|---|
| 18 | EE | Chunxi Chen,
Bertil Schmidt:
Computing Large-Scale Alignments on a Multi-Cluster.
CLUSTER 2003: 38-45 |
| 17 | EE | Weiguo Liu,
Bertil Schmidt:
Parallel Design Pattern for Computational Biology and Scientific Computing Applications.
CLUSTER 2003: 456-459 |
| 16 | EE | Ishfaq Ahmad,
Pieter Jonker,
Bertil Schmidt,
Andreas Uhl:
Topic Introduction.
Euro-Par 2003: 850 |
| 15 | EE | Bertil Schmidt,
Lin Feng,
Amey V. Laud,
Yusdi Santoso:
Parallel Detection of Regulatory Elements with gMP.
IPDPS 2003: 156 |
| 14 | | Manfred Schimmler,
Bertil Schmidt,
Hans-Werner Lang:
Design of a Bit-Serial Floating Point Unit for a Fine Grained Parallel Processor Array.
PDPTA 2003: 255-261 |
| 13 | | Manfred Schimmler,
Bertil Schmidt,
Hans-Werner Lang,
Sven Heithecker:
An Area-Efficient Bit-Serial Integer Multiplier.
VLSI 2003: 131-137 |
| 2002 |
|---|
| 12 | EE | Bertil Schmidt,
Heiko Schröder,
Manfred Schimmler:
Massively Parallel Solutions for Molecular Sequence Analysis.
IPDPS 2002 |
| 11 | EE | Bertil Schmidt,
Heiko Schröder,
Manfred Schimmler:
A hybrid architecture for bioinformatics.
Future Generation Comp. Syst. 18(6): 855-862 (2002) |
| 2001 |
|---|
| 10 | EE | Bertil Schmidt,
Heiko Schröder,
Manfred Schimmler:
Scanning Biosequence Databases on a Hybrid Parallel Architecture.
Euro-Par 2001: 360-370 |
| 9 | EE | Bertil Schmidt,
Heiko Schröder,
Manfred Schimmler:
Protein Sequence Comparison on the Instruction Systolic Array.
PaCT 2001: 498-509 |
| 8 | | Bertil Schmidt,
Heiko Schröder,
Manfred Schimmler:
Tomographic Image Reconstruction on the Instruction Systolic Array.
Computers and Artificial Intelligence 20(1): (2001) |
| 7 | | Bertil Schmidt,
Heiko Schröder:
A Hybrid Architecture for Multimedia Processors.
Computers and Artificial Intelligence 20(3): (2001) |
| 2000 |
|---|
| 6 | EE | Bertil Schmidt:
Design of a Parallel Accelerator for Volume Rendering.
Euro-Par 2000: 1095-1104 |
| 1999 |
|---|
| 5 | EE | Bertil Schmidt,
Manfred Schimmler:
A Parallel Accelerator Architecture for Multimedia Video Compression.
Euro-Par 1999: 950-960 |
| 4 | | Bertil Schmidt,
Manfred Schimmler,
Heiko Schröder:
A Morphological Approach to Hough Transform on an Instruction Systolic Array.
Computers and Artificial Intelligence 18(6): (1999) |
| 1998 |
|---|
| 3 | EE | Bertil Schmidt,
Manfred Schimmler,
Heiko Schröder:
Long Operand Arithmetic on Instruction Systolic Computer Architectures and Its Application in RSA Cryptography.
Euro-Par 1998: 916-922 |
| 1997 |
|---|
| 2 | | Bertil Schmidt,
Manfred Schimmler,
Heiko Schröder:
Morphological Hough Transform on the Instruction Systolic Array.
Euro-Par 1997: 798-806 |
| 1995 |
|---|
| 1 | | Udo Mahlmeister,
Bertil Schmidt,
Gerald Sommer:
Preattentive Colour Features by Steerable Filters.
DAGM-Symposium 1995: 464-472 |
