Laxmi Parida

2008
53	EE	Laxmi Parida, Marta Melé, Francesc Calafell, Jaume Bertranpetit: Estimating the Ancestral Recombinations Graph (ARG) as Compatible Networks of SNP Patterns. Journal of Computational Biology 15(9): 1133-1153 (2008)
52	EE	Alberto Apostolico, Laxmi Parida, Simona E. Rombo: Motif patterns in 2D. Theor. Comput. Sci. 390(1): 40-55 (2008)
51	EE	Matteo Comin, Laxmi Parida: Detection of subtle variations as consensus motifs. Theor. Comput. Sci. 395(2-3): 158-170 (2008)
2007
50	EE	Matteo Comin, Laxmi Parida: Subtle Motif Discovery for Detection of DNA Regulatory Sites. APBC 2007: 27-36
49	EE	Ruhong Zhou, Laxmi Parida, Kush Kapila, Sudhir P. Mudur: PROTERAN: animated terrain evolution for visual analysis of patterns in protein folding trajectory. Bioinformatics 23(1): 99-106 (2007)
48	EE	Laxmi Parida: Gapped Permutation Pattern Discovery for Gene Order Comparisons. Journal of Computational Biology 14(1): 45-55 (2007)
47	EE	Laxmi Parida: Discovering Topological Motifs Using a Compact Notation. Journal of Computational Biology 14(3): 300-323 (2007)
46	EE	Laxmi Parida: Statistical Significance of Large Gene Clusters. Journal of Computational Biology 14(9): 1145-1159 (2007)
2006
45	EE	Laxmi Parida: A PQ Framework for Reconstructions of Common Ancestors and Phylogeny. Comparative Genomics 2006: 141-155
44	EE	Alberto Apostolico, Matteo Comin, Laxmi Parida: Bridging Lossy and Lossless Compression by Motif Pattern Discovery. GTIT-C 2006: 793-813
43	EE	Ravi Vijaya Satya, Amar Mukherjee, Gabriela Alexe, Laxmi Parida, Gyan Bhanot: Constructing Near-Perfect Phylogenies with multiple homoplasy events. ISMB (Supplement of Bioinformatics) 2006: 514-522
42	EE	Md. Enamul Karim, Laxmi Parida, Arun Lakhotia: Using Permutation Patterns for Content-Based Phylogeny. PRIB 2006: 115-125
41	EE	Ajay K. Royyuru, Gabriela Alexe, Daniel E. Platt, Ravi Vijaya Satya, Laxmi Parida, Saharon Rosset, Gyan Bhanot: Inferring Common Origins from mtDNA. RECOMB 2006: 246-247
40	EE	Laxmi Parida: Gapped Permutation Patterns for Comparative Genomics. WABI 2006: 376-387
39	EE	Laxmi Parida: Using PQ Structures for Genomic Rearrangement Phylogeny. Journal of Computational Biology 13(10): 1685-1700 (2006)
2005
38		Laxmi Parida, Naren Ramakrishnan: Redescription Mining: Structure Theory and Algorithms. AAAI 2005: 837-844
37	EE	J. Feng, Laxmi Parida, Ruhong Zhou: Protein folding trajectory analysis using patterned clusters. APBC 2005: 95-104
36	EE	Gad M. Landau, Laxmi Parida, Oren Weimann: Using PQ Trees for Comparative Genomics. CPM 2005: 128-143
35	EE	Alberto Apostolico, Matteo Comin, Laxmi Parida: Off-Line Compression by Extensible Motifs. DCC 2005: 450
34	EE	Alberto Apostolico, Matteo Comin, Laxmi Parida: Conservative extraction of over-represented extensible motifs. ISMB (Supplement of Bioinformatics) 2005: 9-18
33	EE	Alberto Apostolico, Matteo Comin, Laxmi Parida: Bridging Lossy and Lossless Compression by Motif Pattern Discovery. Electronic Notes in Discrete Mathematics 21: 219-225 (2005)
32	EE	Md. Enamul Karim, Andrew Walenstein, Arun Lakhotia, Laxmi Parida: Malware phylogeny generation using permutations of code. Journal in Computer Virology 1(1-2): 13-23 (2005)
31	EE	Gad M. Landau, Laxmi Parida, Oren Weimann: Gene Proximity Analysis across Whole Genomes via PQ Trees1. Journal of Computational Biology 12(10): 1289-1306 (2005)
30	EE	Abhijit Chattaraj, Laxmi Parida: An inexact-suffix-tree-based algorithm for detecting extensible patterns. Theor. Comput. Sci. 335(1): 3-14 (2005)
2004
29	EE	Alberto Apostolico, Matteo Comin, Laxmi Parida: Motifs in Ziv-Lempel-Welch Clef. Data Compression Conference 2004: 72-81
28	EE	Alberto Apostolico, Laxmi Parida: Incremental Paradigms of Motif Discovery. Journal of Computational Biology 11(1): 15-25 (2004)
27	EE	Revital Eres, Gad M. Landau, Laxmi Parida: Permutation Pattern Discovery in Biosequences. Journal of Computational Biology 11(6): 1050-1060 (2004)
2003
26	EE	Alberto Apostolico, Laxmi Parida: Compression and the Wheel of Fortune. DCC 2003: 143-152
25	EE	Revital Eres, Gad M. Landau, Laxmi Parida: A Combinatorial Approach to Automatic Discovery of Cluster-Patterns. WABI 2003: 139-150
24		Tien Huynh, Isidore Rigoutsos, Laxmi Parida, Daniel E. Platt, Tetsuo Shibuya: The web server of IBM's Bioinformatics and Pattern Discovery group. Nucleic Acids Research 31(13): 3645-3650 (2003)
2001
23	EE	Laxmi Parida, Isidore Rigoutsos, Daniel E. Platt: An Output-Sensitive Flexible Pattern Discovery Algorithm. CPM 2001: 131-142
22	EE	Aris Floratos, Isidore Rigoutsos, Laxmi Parida, Yuan Gao: DELPHI: A pattern-based method for detecting sequence similarity. IBM Journal of Research and Development 45(3): 455-474 (2001)
21	EE	Daniel E. Platt, Laxmi Parida, Yuan Gao, Aris Floratos, Isidore Rigoutsos: QSAR in grossly underdetermined systems: Opportunities and issues. IBM Journal of Research and Development 45(3): 533-544 (2001)
20	EE	Rohit Parikh, Laxmi Parida, Vaughan R. Pratt: Sock Sorting: An Example of a Vague Algorithm. Logic Journal of the IGPL 9(5): (2001)
2000
19	EE	Laxmi Parida: Some Results on Flexible-Pattern Discovery. CPM 2000: 33-45
18	EE	Laxmi Parida, Isidore Rigoutsos, Aris Floratos, Daniel E. Platt, Yuan Gao: Pattern discovery on character sets and real-valued data: linear bound on irredundant motifs and an efficient polynomial time algorithm. SODA 2000: 297-308
17		Laxmi Parida, Bud Mishra: Partitioning single-molecule maps into multiple populations: algorithms and probabilistic analysis. Discrete Applied Mathematics 104(1-3): 203-227 (2000)
1999
16		Isidore Rigoutsos, Yuan Gao, Aris Floratos, Laxmi Parida: Building Dictionaries of 1D and 3D Motifs by Mining the Unaligned 1D Sequences of 17 Archaeal and Bacterial Genomes. ISMB 1999: 223-233
15	EE	Aris Floratos, Isidore Rigoutsos, Laxmi Parida, Gustovo Stolovitzky, Yuan Gao: Sequence homology detection through large scale pattern discovery. RECOMB 1999: 164-169
14	EE	Laxmi Parida, Dan Geiger: Mass Estimation of DNA Molecules and Extraction of Ordered Restriction Maps in Optical Mapping Imagery. Algorithmica 25(2-3): 295-310 (1999)
13		Laxmi Parida, Aris Floratos, Isidore Rigoutsos: An Approximation Algorithm for Alignment of Multiple Sequences using Motif Discovery. J. Comb. Optim. 3(2-3): 247-275 (1999)
1998
12	EE	Laxmi Parida, Bud Mishra: Partitioning K clones: hardness results and practical algorithms for the K-populations problem. RECOMB 1998: 192-201
11	EE	Laxmi Parida, Davi Geiger, Robert A. Hummel: Junctions: Detection, Classification, and Reconstruction. IEEE Trans. Pattern Anal. Mach. Intell. 20(7): 687-698 (1998)
10		Laxmi Parida: A Uniform Framework for Ordered Restriction Map Problems. Journal of Computational Biology 5(4): 725-740 (1998)
1997
9		Laxmi Parida, Davi Geiger, Robert A. Hummel: Kona: A Multi-junction Detector Using Minimum Description Length Principle. EMMCVPR 1997: 51-65
8	EE	S. Muthukrishnan, Laxmi Parida: Towards constructing physical maps by optical mapping (extended abstract): an effective, simple, combinatorial approach. RECOMB 1997: 209-219
1996
7	EE	Davi Geiger, Krishnan Kumaran, Laxmi Parida: Visual Organization for Figure/Ground Separation. CVPR 1996: 155-160
1995
6	EE	Laxmi Parida, Sudhir P. Mudur: Common tangents to planar parametric curves: a geometric solution. Computer-Aided Design 27(1): 41-47 (1995)
1994
5		Laxmi Parida, Sudhir P. Mudur: Computational methods for evaluating swept object boundaries. The Visual Computer 10(5): 266-276 (1994)
1993
4		Laxmi Parida: Vinyas: An Interactive Calligraphic Type Design System. ICCG 1993: 287-299
3	EE	Laxmi Parida, Sudhir P. Mudur: Constraint-satisfying planar development of complex surfaces. Computer-Aided Design 25(4): 225-232 (1993)
2	EE	Laxmi Parida: A computational technique for general shape deformations for use in font design. Computers & Graphics 17(4): 349-356 (1993)
1991
1	EE	Laxmi Parida, Pramod Koparkar: A closed form solution to the problem of tangential circles, lines, points with extension to 3D. Computers & Graphics 15(1): 49-55 (1991)

Coauthor Index

1	Gabriela Alexe	[41] [43]
2	Alberto Apostolico	[26] [28] [29] [33] [34] [35] [44] [52]
3	Jaume Bertranpetit	[53]
4	Gyan Bhanot	[41] [43]
5	Francesc Calafell	[53]
6	Abhijit Chattaraj	[30]
7	Matteo Comin	[29] [33] [34] [35] [44] [50] [51]
8	Revital Eres	[25] [27]
9	J. Feng	[37]
10	Aris Floratos	[13] [15] [16] [18] [21] [22]
11	Yuan Gao	[15] [16] [18] [21] [22]
12	Dan Geiger	[14]
13	Davi Geiger	[7] [9] [11]
14	Robert A. Hummel	[9] [11]
15	Tien Huynh	[24]
16	Kush Kapila	[49]
17	Md. Enamul Karim	[32] [42]
18	Pramod Koparkar	[1]
19	Krishnan Kumaran	[7]
20	Arun Lakhotia	[32] [42]
21	Gad M. Landau	[25] [27] [31] [36]
22	Marta Melé	[53]
23	Bud Mishra (Bhubaneswar Mishra)	[12] [17]
24	Sudhir P. Mudur	[3] [5] [6] [49]
25	Amar Mukherjee	[43]
26	S. Muthukrishnan (S. Muthu Muthukrishnan)	[8]
27	Rohit Parikh	[20]
28	Daniel E. Platt	[18] [21] [23] [24] [41]
29	Vaughan R. Pratt	[20]
30	Naren Ramakrishnan	[38]
31	Isidore Rigoutsos	[13] [15] [16] [18] [21] [22] [23] [24]
32	Simona E. Rombo	[52]
33	Saharon Rosset	[41]
34	Ajay K. Royyuru	[41]
35	Ravi Vijaya Satya	[41] [43]
36	Tetsuo Shibuya	[24]
37	Gustovo Stolovitzky	[15]
38	Andrew Walenstein	[32]
39	Oren Weimann	[31] [36]
40	Ruhong Zhou	[37] [49]

Colors in the list of coauthors