Paola Bonizzoni

2009
44	EE	Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola, Romeo Rizzi: Pure Parsimony Xor Haplotyping. ISBRA 2009: 186-197
43	EE	Paola Bonizzoni, Claudio Ferretti, Anthonath Roslin Sagaya Mary, Giancarlo Mauri: Picture Languages Generated by Assembling Tiles. LATA 2009: 224-235
42	EE	Paola Bonizzoni, S. Barry Cooper, Benedikt Löwe, Andrea Sorbi: Foreword. Theor. Comput. Sci. 410(4-5): 283-284 (2009)
2008
41	EE	Tiziana Castrignanò, M. D'Antonio, Anna Anselmo, Danilo Carrabino, A. D'Onorio De Meo, A. M. D'Erchia, Flavio Licciulli, M. Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, A. Riva, Raffaella Rizzi, Paola Bonizzoni, Graziano Pesole: ASPicDB: A database resource for alternative splicing analysis. Bioinformatics 24(10): 1300-1304 (2008)
40	EE	Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Tao Jiang: On the Approximation of Correlation Clustering and Consensus Clustering. J. Comput. Syst. Sci. 74(5): 671-696 (2008)
2007
39	EE	Paola Bonizzoni: A Linear-Time Algorithm for the Perfect Phylogeny Haplotype Problem. Algorithmica 48(3): 267-285 (2007)
38	EE	Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi: Anonymizing Binary Tables is APX-hard CoRR abs/0707.0421: (2007)
37	EE	Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Guillaume Fertin, Raffaella Rizzi, Stéphane Vialette: Exemplar Longest Common Subsequence. IEEE/ACM Trans. Comput. Biology Bioinform. 4(4): 535-543 (2007)
2006
36	EE	Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Giancarlo Mauri: Fingerprint Clustering with Bounded Number of Missing Values. CPM 2006: 106-116
35	EE	Paola Bonizzoni, Giancarlo Mauri: A Decision Procedure for Reflexive Regular Splicing Languages. Developments in Language Theory 2006: 315-326
34	EE	Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Guillaume Fertin, Stéphane Vialette: Exemplar Longest Common Subsequence. International Conference on Computational Science (2) 2006: 622-629
33	EE	Paola Bonizzoni, Clelia de Felice, Giancarlo Mauri, Rosalba Zizza: Linear splicing and syntactic monoid. Discrete Applied Mathematics 154(3): 452-470 (2006)
32	EE	Tiziana Castrignanò, Raffaella Rizzi, Ivano Giuseppe Talamo, Paolo D'Onorio De Meo, Anna Anselmo, Paola Bonizzoni, Graziano Pesole: ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization. Nucleic Acids Research 34(Web-Server-Issue): 440-443 (2006)
2005
31	EE	Paola Bonizzoni, Clelia de Felice, Giancarlo Mauri: Recombinant DNA , Gene Splicing as Generative Devices of Formal Languages. CiE 2005: 65-67
30	EE	Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Tao Jiang: Correlation Clustering and Consensus Clustering. ISAAC 2005: 226-235
29	EE	Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Lorenzo Mariani: Experimental Analysis of a New Algorithm for Partial Haplotype Completion. International Conference on Computational Science (2) 2005: 952-959
28	EE	Paola Bonizzoni, Raffaella Rizzi, Graziano Pesole: ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences. BMC Bioinformatics 6: 244 (2005)
27	EE	Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi: Approximating Clustering of Fingerprint Vectors with Missing Values CoRR abs/cs/0511082: (2005)
26	EE	Paola Bonizzoni, Clelia de Felice, Giancarlo Mauri, Rosalba Zizza: On the power of circular splicing. Discrete Applied Mathematics 150(1-3): 51-66 (2005)
25	EE	Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Lorenzo Mariani: Experimental analysis of a new algorithm for partial haplotype completion. IJBRA 1(4): 461-473 (2005)
24	EE	Paola Bonizzoni, Clelia de Felice, Rosalba Zizza: The structure of reflexive regular splicing languages via Sch6uuml;tzenberger constants. Theor. Comput. Sci. 334(1-3): 71-98 (2005)
23	EE	Paola Bonizzoni, Giancarlo Mauri: Regular splicing languages and subclasses. Theor. Comput. Sci. 340(1): 349-363 (2005)
22	EE	Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi: Reconciling a gene tree to a species tree under the duplication cost model. Theor. Comput. Sci. 347(1-2): 36-53 (2005)
2004
21	EE	Paola Bonizzoni, Gianluca Della Vedova, Tao Jiang: Foreword - Special Issue on Bioinformatics. J. Comput. Sci. Technol. 19(1): 1 (2004)
2003
20	EE	Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi: Reconciling Gene Trees to a Species Tree. CIAC 2003: 120-131
19	EE	Paola Bonizzoni, Clelia de Felice, Giancarlo Mauri, Rosalba Zizza: Regular Languages Generated by Reflexive Finite Splicing Systems. Developments in Language Theory 2003: 134-145
18	EE	Paola Bonizzoni, Graziano Pesole, Raffaella Rizzi: A Method to Detect Gene Structure and Alternative Splice Sites by Agreeing ESTs to a Genomic Sequence. WABI 2003: 63-77
17	EE	Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Jing Li: The Haplotyping Problem: An Overview of Computational Models and Solutions. J. Comput. Sci. Technol. 18(6): 675-688 (2003)
2002
16	EE	Paola Bonizzoni, Clelia de Felice, Giancarlo Mauri, Rosalba Zizza: Decision Problems for Linear and Circular Splicing Systems. Developments in Language Theory 2002: 78-92
2001
15	EE	Paolo Barone, Paola Bonizzoni, Gianluca Della Vedova, Giancarlo Mauri: An approximation algorithm for the shortest common supersequence problem: an experimental analysis. SAC 2001: 56-60
14		Paola Bonizzoni, Gianluca Della Vedova, Giancarlo Mauri: Experimenting an approximation algorithm for the LCS. Discrete Applied Mathematics 110(1): 13-24 (2001)
13	EE	Paola Bonizzoni, Claudio Ferretti, Giancarlo Mauri, Rosalba Zizza: Separating some splicing models. Inf. Process. Lett. 79(6): 255-259 (2001)
12	EE	Paola Bonizzoni, Ross M. McConnell: Nesting of prime substructures in k-ary relations. Theor. Comput. Sci. 259(1-2): 341-357 (2001)
11	EE	Paola Bonizzoni, Gianluca Della Vedova: The complexity of multiple sequence alignment with SP-score that is a metric. Theor. Comput. Sci. 259(1-2): 63-79 (2001)
2000
10	EE	Paola Bonizzoni, Gianluca Della Vedova, Giancarlo Mauri: Approximating the Maximum Isomorphic Agreement Subtree Is Hard. CPM 2000: 119-128
9	EE	Paola Bonizzoni, Clelia de Felice, Giancarlo Mauri, Rosalba Zizza: DNA and Circular Splicing. DNA Computing 2000: 117-129
8		Paola Bonizzoni, Gianluca Della Vedova, Giancarlo Mauri: Approximating the Maximum Isomorphic Agreement Subtree is Hard. Int. J. Found. Comput. Sci. 11(4): 579-590 (2000)
1999
7		Paola Bonizzoni, Gianluca Della Vedova: An Algorithm for the Modular Decomposition of Hypergraphs. J. Algorithms 32(2): 65-86 (1999)
1995
6		Paola Bonizzoni, Gianluca Della Vedova: Modular Decomposition of Hypergraphs. WG 1995: 303-317
1994
5		Paola Bonizzoni: A Tight Lower Bound for Primitivity in k-Structures. ICALP 1994: 556-567
4		Paola Bonizzoni: Primitive 2-structures with the (n-2)-Property. Theor. Comput. Sci. 132(2): 151-178 (1994)
1992
3		Ahmed Saoudi, Paola Bonizzoni: Automata on infinite trees and rational control. Tree Automata and Languages 1992: 189-200
2		Paola Bonizzoni, Giancarlo Mauri, Giovanni Pighizzini, Nicoletta Sabadini: Recognizing sets of labelled acyclic graphs. Tree Automata and Languages 1992: 201-224
1		Paola Bonizzoni, Giancarlo Mauri: On Automata on Infinite Trees. Theor. Comput. Sci. 93(2): 227-244 (1992)

Coauthor Index

1	Anna Anselmo	[32] [41]
2	Paolo Barone	[15]
3	Danilo Carrabino	[41]
4	Tiziana Castrignanò	[32] [41]
5	S. Barry Cooper	[42]
6	M. D'Antonio	[41]
7	A. M. D'Erchia	[41]
8	Riccardo Dondi	[17] [20] [22] [25] [27] [29] [30] [34] [36] [37] [38] [40] [44]
9	Clelia de Felice	[9] [16] [19] [24] [26] [31] [33]
10	Claudio Ferretti	[13] [43]
11	Guillaume Fertin	[34] [37]
12	Tao Jiang	[21] [30] [40]
13	Jing Li	[17]
14	Flavio Licciulli	[41]
15	Benedikt Löwe	[42]
16	M. Mangiulli	[41]
17	Lorenzo Mariani	[25] [29]
18	Anthonath Roslin Sagaya Mary	[43]
19	Giancarlo Mauri	[1] [2] [8] [9] [10] [13] [14] [15] [16] [19] [23] [26] [31] [33] [35] [36] [43]
20	Ross M. McConnell	[12]
21	A. D'Onorio De Meo	[41]
22	Paolo D'Onorio De Meo	[32]
23	Flavio Mignone	[41]
24	Giulio Pavesi	[41]
25	Graziano Pesole	[18] [28] [32] [41]
26	Ernesto Picardi	[41]
27	Giovanni Pighizzini	[2]
28	Yuri Pirola	[44]
29	A. Riva	[41]
30	Raffaella Rizzi	[18] [28] [32] [37] [41]
31	Romeo Rizzi	[44]
32	Nicoletta Sabadini	[2]
33	Ahmed Saoudi	[3]
34	Andrea Sorbi	[42]
35	Ivano Giuseppe Talamo	[32]
36	Gianluca Della Vedova	[6] [7] [8] [10] [11] [14] [15] [17] [20] [21] [22] [25] [27] [29] [30] [34] [36] [37] [38] [40] [44]
37	Stéphane Vialette	[34] [37]
38	Rosalba Zizza	[9] [13] [16] [19] [24] [26] [33]

Colors in the list of coauthors