Genomics, Proteomics & Bioinformatics, Volume 5

Volume 5, Number 1, 2007

• Jun Yu:
  A Content-Centric Organization of the Genetic Code. 1-6
  Electronic Edition (link) BibTeX
• Hao Fan, Jia-You Chu:
  A Brief Review of Short Tandem Repeat Mutation. 7-14
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• Xingdong Feng, Shu-Guang Huang, Jian-Yong Shou, Birong Liao, Jonathan M. Yingling, Xiang Ye, Xi Lin, Lawrence M. Gelbert, Eric W. Su, Jude E. Onyia, Shuyu Li:
  Analysis of Pathway Activity in Primary Tumors and NCI60 Cell Lines Using Gene Expression Profiling Data. 15-24
  Electronic Edition (link) BibTeX
• Liang Zhang, Lin Tao, Lin Ye, Ling He, Yuan-Zhong Zhu, Yue-Dong Zhu, Yan Zhou:
  Alternative Splicing and Expression Profile Analysis of Expressed Sequence Tags in Domestic Pig. 25-34
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• S. P. Kumar, V. Dalai, N. K. Singh, T. R. Sharma:
  Comparative Analysis of the 100 kb Region Containing the Pi-k_h Locus Between indica and japonica Rice Lines. 35-44
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• Guillaume Brysbaert, Sebastian Noth, Arndt Benecke:
  Generation of Synthetic Transcriptome Data with Defined Statistical Properties for the Development and Testing of New Analysis Methods. 45-52
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• Satoshi Tamaki, Kazuharu Arakawa, Nobuaki Kono, Masaru Tomita:
  Restauro-G: A Rapid Genome Re-Annotation System for Comparative Genomics. 53-58
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• Qiao-Fang Hou, Bin Yu, Sheng-Bin Li:
  Genetic Polymorphisms of Nine X-STR Loci in Four Population Groups from Inner Mongolia, China. 59-65
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• Ya-Jun Deng, Jiang-Wei Yan, Xiao-Guang Yu, Yuan-Zhe Li, Hao-Fang Mu, Yan-Qing Huang, Xiao-Tie Shi, Wei-Min Sun:
  Genetic Analysis of 15 STR Loci in Chinese Han Population from West China. 66-69
  Electronic Edition (link) BibTeX
• Trias Thireou, George M. Spyrou, Vassilis Atlamazoglou:
  A Survey of the Availability of Primary Bioinformatics Web Resources. 70-76
  Electronic Edition (link) BibTeX

Volume 5, Number 2, 2007

• William C. S. Cho:
  Proteomics Technologies and Challenges. 77-85
  Electronic Edition (link) BibTeX
• Maarten Clements, Eugene P. van Someren, Theo A. Knijnenburg, Marcel J. T. Reinders:
  Integration of Known Transcription Factor Binding Site Information and Gene Expression Data to Advance from Co-Expression to Co-Regulation. 86-101
  Electronic Edition (link) BibTeX
• Jinyu Wu, Fangqing Zhao, Jie Bai, Gang Deng, Song Qin, Qiyu Bao:
  Adaptive Evolution of cry Genes in Bacillus thuringiensis: Implications for Their Specificity Determination. 102-110
  Electronic Edition (link) BibTeX
• Li Zhu, Xian-Kai Liu, Ge Zhao, Yi-Dan Zhi, Xin Bu, Tian-Yi Ying, Er-Ling Feng, Jie Wang, Xue-Min Zhang, Pei-Tang Huang, Heng-Liang Wang:
  Dynamic Proteome Changes of Shigella flexneri 2a During Transition from Exponential Growth to Stationary Phase. 111-120
  Electronic Edition (link) BibTeX
• Guylaine Poisson, Cedric Chauve, Xin Chen, Anne Bergeron:
  FragAnchor: A Large-Scale Predictor of Glycosylphosphatidylinositol Anchors in Eukaryote Protein Sequences by Qualitative Scoring. 121-130
  Electronic Edition (link) BibTeX
• Wei Wei, Xiao-Dan Yu:
  Comparative Analysis of Regulatory Motif Discovery Tools for Transcription Factor Binding Sites. 131-142
  Electronic Edition (link) BibTeX

Volume 5, Numbers 3-4, 2007

• Jing-Fa Xiao, Jun Yu:
  A Scenario on the Stepwise Evolution of the Genetic Code. 143-151
  Electronic Edition (link) BibTeX
• Senthilkumar Damodaran, Troy D. Wood, Priyadharsini Nagarajan, Richard A. Rabin:
  Evaluating Peptide Mass Fingerprinting-based Protein Identification. 152-157
  Electronic Edition (link) BibTeX
• Andy B. Chen, Kazunori Hamamura, Guohua Wang, Weirong Xing, Subburaman Mohan, Hiroki Yokota, Yunlong Liu:
  Model-based Comparative Prediction of Transcription-Factor Binding Motifs in Anabolic Responses in Bone. 158-165
  Electronic Edition (link) BibTeX
• Purnima Guda, Chittibabu Guda, Shankar Subramaniam:
  Reconstruction of Pathways Associated with Amino Acid Metabolism in Human Mitochondria. 166-176
  Electronic Edition (link) BibTeX
• Mahmood A. Mahdavi, Yen-Han Lin:
  Prediction of Protein-Protein Interactions Using Protein Signature Profiling. 177-186
  Electronic Edition (link) BibTeX
• Manja Marz, Axel Mosig, Bärbel M. R. Stadler, Peter F. Stadler:
  U7 snRNAs: A Computational Survey. 187-195
  Electronic Edition (link) BibTeX
• Sunil Archak, Javaregowda Nagaraju:
  Computational Prediction of Rice (Oryza sativa) miRNA Targets. 196-206
  Electronic Edition (link) BibTeX
• Liping Chen, Jianping Ye, Yan Liu, Jinghuan Wang, Weiting Su, Fengtang Yang, Wenhui Nie:
  Construction, Characterization, and Chromosomal Mapping of a Fosmid Library of the White-Cheeked Gibbon (Nomascus leucogenys). 207-215
  Electronic Edition (link) BibTeX
• Frankie B. Stentz, Abbas E. Kitabchi:
  Transcriptome and Proteome Expressions Involved in Insulin Resistance in Muscle and Activated T-Lymphocytes of Patients with Type 2 Diabetes. 216-235
  Electronic Edition (link) BibTeX
• Nandita Bachhawat, Balvinder Singh:
  Mycobacterial PE_PGRS Proteins Contain Calcium-Binding Motifs with Parallel beta-roll Folds. 236-241
  Electronic Edition (link) BibTeX
• Nina Zhou, Lipo Wang:
  A Modified T-test Feature Selection Method and Its Application on the HapMap Genotype Data. 242-249
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• S. Muthukrishnan, Aarti Garg, G. P. S. Raghava:
  Oxypred: Prediction and Classification of Oxygen-Binding Proteins. 250-252
  Electronic Edition (link) BibTeX
• Susan Costantini, Giovanni Colonna, Angelo M. Facchiano:
  FASMA: A Service to Format and Analyze Sequences in Multiple Alignments. 253-255
  Electronic Edition (link) BibTeX
• Edward M. Smith, Jack Littrell, Michael Olivier:
  Automated SNP Genotype Clustering Algorithm to Improve Data Completeness in High-Throughput SNP Genotyping Datasets from Custom Arrays. 256-259
  Electronic Edition (link) BibTeX