| 2008 |
|---|
| 11 | EE | Arpith C. Jacob,
Jeremy Buhler,
Roger D. Chamberlain:
Accelerating Nussinov RNA secondary structure prediction with systolic arrays on FPGAs.
ASAP 2008: 191-196 |
| 10 | EE | Maya Gokhale,
Jonathan Cohen,
Andy Yoo,
William Marcus Miller,
Arpith C. Jacob,
Craig Ulmer,
Roger Pearce:
Hardware Technologies for High-Performance Data-Intensive Computing.
IEEE Computer 41(4): 60-68 (2008) |
| 9 | EE | Arpith C. Jacob,
Joseph M. Lancaster,
Jeremy Buhler,
Brandon Harris,
Roger D. Chamberlain:
Mercury BLASTP: Accelerating Protein Sequence Alignment.
TRETS 1(2): (2008) |
| 2007 |
|---|
| 8 | EE | Arpith C. Jacob,
Joseph M. Lancaster,
Jeremy Buhler,
Roger D. Chamberlain:
FPGA-accelerated seed generation in Mercury BLASTP.
FCCM 2007: 95-106 |
| 7 | EE | Brandon Harris,
Arpith C. Jacob,
Joseph M. Lancaster,
Jeremy Buhler,
Roger D. Chamberlain:
A Banded Smith-Waterman FPGA Accelerator for Mercury BLASTP.
FPL 2007: 765-769 |
| 6 | EE | Arpith C. Jacob,
Maya Gokhale:
Language classification using n-grams accelerated by FPGA-based Bloom filters.
HPRCTA 2007: 31-37 |
| 5 | EE | Arpith C. Jacob,
Joseph M. Lancaster,
Jeremy D. Buhler,
Roger D. Chamberlain:
Preliminary results in accelerating profile HMM search on FPGAs.
IPDPS 2007: 1-8 |
| 4 | EE | Arpith C. Jacob,
Sugata Sanyal,
Marcin Paprzycki,
Rajan Arora,
Maria Ganzha:
Whole Genome Comparison on a Network of Workstations.
ISPDC 2007: 31-36 |
| 3 | EE | Arpith C. Jacob,
Marcin Paprzycki,
Maria Ganzha,
Sugata Sanyal:
Applying SIMD Approach to Whole Genome Comparison on Commodity Hardware.
PPAM 2007: 1220-1229 |
| 2 | EE | Praveen Krishnamurthy,
Jeremy Buhler,
Roger D. Chamberlain,
Mark A. Franklin,
Kwame Gyang,
Arpith C. Jacob,
Joseph M. Lancaster:
Biosequence Similarity Search on the Mercury System.
VLSI Signal Processing 49(1): 101-121 (2007) |
| 2006 |
|---|
| 1 | EE | Arpith C. Jacob,
Brandon Harris,
Jeremy Buhler,
Roger D. Chamberlain,
Young H. Cho:
Scalable Softcore Vector Processor for Biosequence Applications.
FCCM 2006: 295-296 |
