Benno Schwikowski

2008
21	EE	Aurélien Mazurie, Danail Bonchev, Benno Schwikowski, Gregory A. Buck: Phylogenetic distances are encoded in networks of interacting pathways. Bioinformatics 24(22): 2579-2585 (2008)
2007
20	EE	Olivier Garcia, Cosmin Saveanu, Melissa S. Cline, Micheline Fromont-Racine, Alain Jacquier, Benno Schwikowski, Tero Aittokallio: GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring. Bioinformatics 23(3): 394-396 (2007)
2006
19	EE	Tero Aittokallio, Benno Schwikowski: Graph-based methods for analysing networks in cell biology. Briefings in Bioinformatics 7(3): 243-255 (2006)
2005
18	EE	David J. Reiss, Iliana Avila-Campillo, Vesteinn Thorsson, Benno Schwikowski, Timothy Galitski: Tools enabling the elucidation of molecular pathways active in human disease: Application to Hepatitis C virus infection. BMC Bioinformatics 6: 154 (2005)
2004
17	EE	David J. Reiss, Benno Schwikowski: Predicting protein-peptide interactions via a network-based motif sampler. ISMB/ECCB (Supplement of Bioinformatics) 2004: 274-282
16	EE	Amir Ben-Dor, Tzvika Hartman, Richard M. Karp, Benno Schwikowski, Roded Sharan, Zohar Yakhini: Towards Optimally Multiplexed Applications of Universal Arrays. Journal of Computational Biology 11(2/3): 476-492 (2004)
2003
15	EE	Amir Ben-Dor, Tzvika Hartman, Benno Schwikowski, Roded Sharan, Zohar Yakhini: Towards optimally multiplexed applications of universal DNA tag systems. RECOMB 2003: 48-56
14		Benno Schwikowski, Martin Vingron: Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions. Discrete Applied Mathematics 127(1): 95-117 (2003)
13	EE	Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Ron Shamir: The Restriction Scaffold Problem. Journal of Computational Biology 10(3/4): 385-398 (2003)
2002
12		Benno Schwikowski: Algorithmic Challenges in Mass Spectrometry and Systems Biology. GI Jahrestagung (Ergänzungsband) 2002: 66-66
11		Trey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel: Discovering regulatory and signalling circuits in molecular interaction networks. ISMB 2002: 233-240
10	EE	Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Ron Shamir: The restriction scaffold problem. RECOMB 2002: 58-66
9		Benno Schwikowski, Ewald Speckenmeyer: On enumerating all minimal solutions of feedback problems. Discrete Applied Mathematics 117(1-3): 253-265 (2002)
8		Mathieu Blanchette, Benno Schwikowski, Martin Tompa: Algorithms for Phylogenetic Footprinting. Journal of Computational Biology 9(2): 211-223 (2002)
2000
7		Mathieu Blanchette, Benno Schwikowski, Martin Tompa: An Exact Algorithm to Identify Motifs in Orthologous Sequences from Multiple Species. ISMB 2000: 37-45
6	EE	Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Zohar Yakhini: Universal DNA tag systems: a combinatorial design scheme. RECOMB 2000: 65-75
5		Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Zohar Yakhini: Universal DNA Tag Systems: A Combinatorial Design Scheme. Journal of Computational Biology 7(3-4): 503-519 (2000)
1997
4	EE	Benno Schwikowski, Martin Vingron: The deferred path heuristic for the generalized tree alignment problem. RECOMB 1997: 257-266
3		Benno Schwikowski, Martin Vingron: The Deferred Path Heuristic for the Generalized Tree Alignment Problem. Journal of Computational Biology 4(3): 415-431 (1997)
1996
2		Benno Schwikowski, Martin Vingron: Attacking Generalized tree Alignment by a Deferred Path Heuristic. German Conference on Bioinformatics 1996: 302-304
1		Benno Schwikowski, Martin Vingron: A Clustering Approach to Generalized Tree Alignment with Application to Alu Repeats. German Conference on Bioinformatics - Selected Papers 1996: 115-124

Coauthor Index

1	Tero Aittokallio	[19] [20]
2	Iliana Avila-Campillo	[18]
3	Amir Ben-Dor	[5] [6] [10] [13] [15] [16]
4	Mathieu Blanchette	[7] [8]
5	Danail Bonchev	[21]
6	Gregory A. Buck	[21]
7	Melissa S. Cline	[20]
8	Micheline Fromont-Racine	[20]
9	Timothy Galitski	[18]
10	Olivier Garcia	[20]
11	Tzvika Hartman	[15] [16]
12	Trey Ideker	[11]
13	Alain Jacquier	[20]
14	Richard M. Karp	[5] [6] [10] [13] [16]
15	Aurélien Mazurie	[21]
16	Owen Ozier	[11]
17	David J. Reiss	[17] [18]
18	Cosmin Saveanu	[20]
19	Ron Shamir	[10] [13]
20	Roded Sharan	[15] [16]
21	Andrew F. Siegel	[11]
22	Ewald Speckenmeyer	[9]
23	Vesteinn Thorsson	[18]
24	Martin Tompa	[7] [8]
25	Martin Vingron	[1] [2] [3] [4] [14]
26	Zohar Yakhini	[5] [6] [15] [16]

Colors in the list of coauthors