2009 | ||
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25 | EE | Daan P. Geerke, Sandra Luber, Koni H. Marti, Wilfred F. van Gunsteren: On the direct calculation of the free energy of quantization for molecular systems in the condensed phase. Journal of Computational Chemistry 30(4): 514-523 (2009) |
2008 | ||
24 | EE | Markus Christen, Wilfred F. van Gunsteren: On searching in, sampling of, and dynamically moving through conformational space of biomolecular systems: A review. Journal of Computational Chemistry 29(2): 157-166 (2008) |
2006 | ||
23 | EE | Haibo Yu, Daan P. Geerke, Haiyan Liu, Wilfred F. van Gunsteren: Molecular dynamics simulations of liquid methanol and methanol-water mixtures with polarizable models. Journal of Computational Chemistry 27(13): 1494-1504 (2006) |
22 | EE | Yu Zhou, Chris Oostenbrink, Aldo Jongejan, Wilfred F. van Gunsteren, Wilfred R. Hagen, Simon W. De Leeuw, Jaap A. Jongejan: Computational study of ground-state chiral induction in small peptides: Comparison of the relative stability of selected amino acid dimers and oligomers in homochiral and heterochiral combinations. Journal of Computational Chemistry 27(7): 857-867 (2006) |
2005 | ||
21 | EE | Haibo Yu, Wilfred F. van Gunsteren: Accounting for polarization in molecular simulation. Computer Physics Communications 172(2): 69-85 (2005) |
20 | EE | Markus Christen, Philippe H. Hünenberger, Dirk Bakowies, Riccardo Baron, Roland Bürgi, Daan P. Geerke, Tim N. Heinz, Mika A. Kastenholz, Vincent Kräutler, Chris Oostenbrink, Christine Peter, Daniel Trzesniak, Wilfred F. van Gunsteren: The GROMOS software for biomolecular simulation: GROMOS05. Journal of Computational Chemistry 26(16): 1719-1751 (2005) |
19 | EE | Thereza A. Soares, Philippe H. Hünenberger, Mika A. Kastenholz, Vincent Kräutler, Thomas Lenz, Roberto D. Lins, Chris Oostenbrink, Wilfred F. van Gunsteren: An improved nucleic acid parameter set for the GROMOS force field. Journal of Computational Chemistry 26(7): 725-737 (2005) |
2004 | ||
18 | EE | Chris Oostenbrink, Alessandra Villa, Alan E. Mark, Wilfred F. van Gunsteren: A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force-field parameter sets 53A5 and 53A6. Journal of Computational Chemistry 25(13): 1656-1676 (2004) |
2003 | ||
17 | EE | Chris Oostenbrink, Wilfred F. van Gunsteren: Single-step perturbations to calculate free energy differences from unphysical reference states: Limits on size, flexibility, and character. Journal of Computational Chemistry 24(14): 1730-1739 (2003) |
16 | EE | Alice Glättli, Xavier Daura, Wilfred F. van Gunsteren: A novel approach for designing simple point charge models for liquid water with three interaction sites. Journal of Computational Chemistry 24(9): 1087-1096 (2003) |
2002 | ||
15 | EE | Fred A. Hamprecht, Walter Thiel, Wilfred F. van Gunsteren: Chemical Library Subset Selection Algorithms: A Unified Derivation Using Spatial Statistics. Journal of Chemical Information and Computer Sciences 42(2): 414-428 (2002) |
14 | EE | D. Kony, Wolfgang Damm, S. Stoll, Wilfred F. van Gunsteren: An improved OPLS-AA force field for carbohydrates. Journal of Computational Chemistry 23(15): 1416-1429 (2002) |
2001 | ||
13 | EE | Lukas D. Schuler, Xavier Daura, Wilfred F. van Gunsteren: An improved GROMOS96 force field for aliphatic hydrocarbons in the condensed phase. Journal of Computational Chemistry 22(11): 1205-1218 (2001) |
12 | EE | Vincent Kräutler, Wilfred F. van Gunsteren, Philippe H. Hünenberger: A fast SHAKE algorithm to solve distance constraint equations for small molecules in molecular dynamics simulations. Journal of Computational Chemistry 22(5): 501-508 (2001) |
2000 | ||
11 | EE | Wolfgang Damm, Wilfred F. van Gunsteren: Reversible peptide folding: Dependence on molecular force field used. Journal of Computational Chemistry 21(9): 774-787 (2000) |
10 | EE | Xavier Daura, Eric Haaksma, Wilfred F. van Gunsteren: Factor Xa: Simulation studies with an eye to inhibitor design. Journal of Computer-Aided Molecular Design 14(6): 507-529 (2000) |
1999 | ||
9 | EE | Heiko Schäfer, Wilfred F. van Gunsteren, Alan E. Mark: Estimating relative free energies from a single ensemble: Hydration free energies. Journal of Computational Chemistry 20(15): 1604-1617 (1999) |
1998 | ||
8 | EE | Xavier Daura, Alan E. Mark, Wilfred F. van Gunsteren: Parametrization of aliphatic CHn united atoms of GROMOS96 force field. Journal of Computational Chemistry 19(5): 535-547 (1998) |
1997 | ||
7 | EE | Christian D. Berweger, Wilfred F. van Gunsteren, Florian Müller-Plathe: Finite element interpolation for combined classical/quantum mechanical molecular dynamics simulations. Journal of Computational Chemistry 18(12): 1484-1495 (1997) |
1995 | ||
6 | H. Bekker, H. J. C. Berendesen, Wilfred F. van Gunsteren: Force and Cirial of Torsional-Angle-Dependent Potentials. Journal of Computational Chemistry 16(5): 527-533 (1995) | |
1994 | ||
5 | Andrew E. Torda, Wilfred F. van Gunsteren: Algorithms for Clustering Molecular Dynamics Confogurations. Journal of Computational Chemistry 15(12): 1331-1340 (1994) | |
4 | Thomas Huber, Andrew E. Torda, Wilfred F. van Gunsteren: Local elevation: A method for improving the searching properties of molecular dynamics simulation. Journal of Computer-Aided Molecular Design 8(6): 695-708 (1994) | |
1993 | ||
3 | Paul R. Gerber, Alan E. Mark, Wilfred F. van Gunsteren: An approximate but efficient method to calculate free energy trends by computer simulation: Application to dihydrofolate reductase-inhibitor complexes. Journal of Computer-Aided Molecular Design 7(3): 305-323 (1993) | |
1992 | ||
2 | Anton Gunzinger, Urs A. Müller, Walter Scott, Bernhard Bäumle, Peter Kohler, Johann vonder Mühll, Florian Müller-Plathe, Wilfred F. van Gunsteren, Walter Guggenbühl: Achieving Super Computer Performance with a DSP Array Processor. SC 1992: 543-550 | |
1 | René C. van Schaik, Wilfred F. van Gunsteren, Herman J. C. Berendsen: Conformational search by potential energy annealing: Algorithm and application to cyclosporin A. Journal of Computer-Aided Molecular Design 6(2): 97-112 (1992) |