Adam C. Siepel

2008
17	EE	Yu Zhang, Giltae Song, Tomás Vinar, Eric D. Green, Adam C. Siepel, Webb Miller: Reconstructing the Evolutionary History of Complex Human Gene Clusters. RECOMB 2008: 29-49
2007
16	EE	Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Heather Trumbower, Daryl J. Thomas, Archana Thakkapallayil, Charles W. Sugnet, Mario Stanke, Kayla E. Smith, Adam C. Siepel, Kate R. Rosenbloom, Brooke L. Rhead, Brian J. Raney, Andy Pohl, J. S. Pedersen, Fan Hsu, Angela S. Hinrichs, Rachel A. Harte, Mark Diekhans, Hiram Clawson, Gill Bejerano, Galt P. Barber, Robert Baertsch, David Haussler, W. James Kent: The UCSC genome browser database: update 2007. Nucleic Acids Research 35(Database-Issue): 668-673 (2007)
2006
15	EE	Adam C. Siepel, Katherine S. Pollard, David Haussler: New Methods for Detecting Lineage-Specific Selection. RECOMB 2006: 190-205
14	EE	Angela S. Hinrichs, Donna Karolchik, Robert Baertsch, Galt P. Barber, Gill Bejerano, Hiram Clawson, Mark Diekhans, Terrence S. Furey, Rachel A. Harte, Fan Hsu, Jennifer Hillman-Jackson, Robert M. Kuhn, J. S. Pedersen, Andy Pohl, Brian J. Raney, Kate R. Rosenbloom, Adam C. Siepel, Kayla E. Smith, Charles W. Sugnet, A. Sultan-Qurraie, Daryl J. Thomas, Heather Trumbower, R. J. Weber, M. Weirauch, Ann S. Zweig, David Haussler, W. James Kent: The UCSC Genome Browser Database: update 2006. Nucleic Acids Research 34(Database-Issue): 590-598 (2006)
2004
13	EE	Vladimir Jojic, Nebojsa Jojic, Christopher Meek, Dan Geiger, Adam C. Siepel, David Haussler, David Heckerman: Efficient approximations for learning phylogenetic HMM models from data. ISMB/ECCB (Supplement of Bioinformatics) 2004: 161-168
12	EE	Adam C. Siepel, David Haussler: Computational identification of evolutionarily conserved exons. RECOMB 2004: 177-186
11	EE	Adam C. Siepel, David Haussler: Combining Phylogenetic and Hidden Markov Models in Biosequence Analysis. Journal of Computational Biology 11(2/3): 413-428 (2004)
2003
10	EE	Adam C. Siepel, David Haussler: Combining phylogenetic and hidden Markov models in biosequence analysis. RECOMB 2003: 277-286
9	EE	Adam C. Siepel: An Algorithm to Enumerate Sorting Reversals for Signed Permutations. Journal of Computational Biology 10(3/4): 575-597 (2003)
2002
8	EE	Adam C. Siepel: An algorithm to enumerate all sorting reversals. RECOMB 2002: 281-290
7	EE	Bernard M. E. Moret, Adam C. Siepel, Jijun Tang, Tao Liu: Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data. WABI 2002: 521-536
2001
6	EE	Adam C. Siepel, Bernard M. E. Moret: Finding an Optimal Inversion Median: Experimental Results. WABI 2001: 189-203
5		Adam C. Siepel, Andrew D. Farmer, Andrew N. Tolopko, Mingzhe Zhuang, Pedro Mendes, William D. Beavis, Bruno W. S. Sobral: ISYS: a decentralized, component-based approach to the integration of heterogeneous bioinformatics resources. Bioinformatics 17(1): 83-94 (2001)
4	EE	Adam C. Siepel, Andrew N. Tolopko, Andrew D. Farmer, Peter A. Steadman, Faye D. Schilkey, B. Dawn Perry, William D. Beavis: An integration platform for heterogeneous bioinformatics software components. IBM Systems Journal 40(2): 570-591 (2001)
1999
3		M. P. Skupski, M. Booker, Andrew D. Farmer, M. Harpold, W. Huang, Jeff T. Inman, Donald Kiphart, C. Kodira, S. Root, Faye D. Schilkey, Jolene Schwertfeger, Adam C. Siepel, D. Stamper, Nina Thayer, R. Thompson, J. Wortman, J. J. Zhuang, Carol Harger: The Genome Sequence DataBase: towards an integrated functional genomics resource. Nucleic Acids Research 27(1): 35-38 (1999)
1998
2		Carol Harger, M. P. Skupski, J. Bingham, Andrew D. Farmer, S. Hoisie, Peter Hraber, Donald Kiphart, L. Krakowski, Mia McLeod, Jolene Schwertfeger, G. A. Seluja, Adam C. Siepel, G. Singh, D. Stamper, Peter A. Steadman, Nina Thayer, R. Thompson, P. Wargo, Mark E. Waugh, J. J. Zhuang, P. A. Schad: The Genome Sequence DataBase (GSDB): improving data quality and data access. Nucleic Acids Research 26(1): 21-26 (1998)
1997
1		Carol Harger, M. P. Skupski, E. Allen, C. Clark, David Crowley, Emily Dickinson, D. Easley, Ada Espinosa-Lujan, Andrew D. Farmer, Chris A. Fields, L. Flores, L. Harris, Gifford Keen, Mo Manning, Michael P. McLeod, John O'Neill, Maria Pumilia, Rhonda Reinert, David Rider, John Rohrlich, Y. Romero, Jolene Schwertfeger, G. A. Seluja, Adam C. Siepel, P. A. Schad: The Genome Sequence DataBase version 1.0 (GSDB): from low pass sequences to complete genomes. Nucleic Acids Research 25(1): 18-23 (1997)

Coauthor Index

1	E. Allen	[1]
2	Robert Baertsch	[14] [16]
3	Galt P. Barber	[14] [16]
4	William D. Beavis	[4] [5]
5	Gill Bejerano	[14] [16]
6	J. Bingham	[2]
7	M. Booker	[3]
8	C. Clark	[1]
9	Hiram Clawson	[14] [16]
10	David Crowley	[1]
11	Emily Dickinson	[1]
12	Mark Diekhans	[14] [16]
13	D. Easley	[1]
14	Ada Espinosa-Lujan	[1]
15	Andrew D. Farmer	[1] [2] [3] [4] [5]
16	Chris A. Fields	[1]
17	L. Flores	[1]
18	Terrence S. Furey	[14]
19	Dan Geiger	[13]
20	Eric D. Green	[17]
21	Carol Harger	[1] [2] [3]
22	M. Harpold	[3]
23	L. Harris	[1]
24	Rachel A. Harte	[14] [16]
25	David Haussler	[10] [11] [12] [13] [14] [15] [16]
26	David Heckerman	[13]
27	Jennifer Hillman-Jackson	[14]
28	Angela S. Hinrichs	[14] [16]
29	S. Hoisie	[2]
30	Peter Hraber	[2]
31	Fan Hsu	[14] [16]
32	W. Huang	[3]
33	Jeff T. Inman	[3]
34	Nebojsa Jojic	[13]
35	Vladimir Jojic	[13]
36	Donna Karolchik	[14] [16]
37	Gifford Keen	[1]
38	W. James Kent	[14] [16]
39	Donald Kiphart	[2] [3]
40	C. Kodira	[3]
41	L. Krakowski	[2]
42	Robert M. Kuhn	[14] [16]
43	Tao Liu	[7]
44	Mo Manning	[1]
45	Mia McLeod	[2]
46	Michael P. McLeod	[1]
47	Christopher Meek	[13]
48	Pedro Mendes	[5]
49	Webb Miller	[17]
50	Bernard M. E. Moret	[6] [7]
51	John O'Neill	[1]
52	J. S. Pedersen	[14] [16]
53	B. Dawn Perry	[4]
54	Andy Pohl	[14] [16]
55	Katherine S. Pollard	[15]
56	Maria Pumilia	[1]
57	Brian J. Raney	[14] [16]
58	Rhonda Reinert	[1]
59	Brooke L. Rhead	[16]
60	David Rider	[1]
61	John Rohrlich	[1]
62	Y. Romero	[1]
63	S. Root	[3]
64	Kate R. Rosenbloom	[14] [16]
65	P. A. Schad	[1] [2]
66	Faye D. Schilkey	[3] [4]
67	Jolene Schwertfeger	[1] [2] [3]
68	G. A. Seluja	[1] [2]
69	G. Singh	[2]
70	M. P. Skupski	[1] [2] [3]
71	Kayla E. Smith	[14] [16]
72	Bruno W. S. Sobral	[5]
73	Giltae Song	[17]
74	D. Stamper	[2] [3]
75	Mario Stanke	[16]
76	Peter A. Steadman	[2] [4]
77	Charles W. Sugnet	[14] [16]
78	A. Sultan-Qurraie	[14]
79	Jijun Tang	[7]
80	Archana Thakkapallayil	[16]
81	Nina Thayer	[2] [3]
82	Daryl J. Thomas	[14] [16]
83	R. Thompson	[2] [3]
84	Andrew N. Tolopko	[4] [5]
85	Heather Trumbower	[14] [16]
86	Tomás Vinar	[17]
87	P. Wargo	[2]
88	Mark E. Waugh	[2]
89	R. J. Weber	[14]
90	M. Weirauch	[14]
91	J. Wortman	[3]
92	Yu Zhang	[17]
93	J. J. Zhuang	[2] [3]
94	Mingzhe Zhuang	[5]
95	Ann S. Zweig	[14] [16]

Colors in the list of coauthors