RECOMB-CG 2008: Paris, France

• Jean-Philippe Doyon, Cedric Chauve, Sylvie Hamel:
  Algorithms for Exploring the Space of Gene Tree/Species Tree Reconciliations. 1-13
  Electronic Edition (link) BibTeX
• James C. Costello, Mira V. Han, Matthew W. Hahn:
  Limitations of Pseudogenes in Identifying Gene Losses. 14-25
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• Paul Ryvkin, Jin Jun, Edward Hemphill, Craig Nelson:
  Duplication Mechanism and Disruptions in Flanking Regions Influence the Fate of Mammalian Gene Duplicates. 26-39
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• Jin Jun, Paul Ryvkin, Edward Hemphill, Ion I. Mandoiu, Craig Nelson:
  Estimating the Relative Contributions of New Genes from Retrotransposition and Segmental Duplication Events during Mammalian Evolution. 40-54
  Electronic Edition (link) BibTeX
• Yifat Felder, Tamir Tuller:
  Discovering Local Patterns of Co-evolution. 55-71
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• Miklós Csürös:
  Ancestral Reconstruction by Asymmetric Wagner Parsimony over Continuous Characters and Squared Parsimony over Distributions. 72-86
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• Bernhard Haubold, Mirjana Domazet-Loso, Thomas Wiehe:
  An Alignment-Free Distance Measure for Closely Related Genomes. 87-99
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• Melvin Zhang, Hon Wai Leong:
  Gene Team Tree: A Compact Representation of All Gene Teams. 100-112
  Electronic Edition (link) BibTeX
• Cuong Than, Guohua Jin, Luay Nakhleh:
  Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer. 113-127
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• Dunarel Badescu, Abdoulaye Baniré Diallo, Mathieu Blanchette, Vladimir Makarenkov:
  An Evolutionary Study of the Human Papillomavirus Genomes. 128-142
  Electronic Edition (link) BibTeX
• Matthias Bernt, Daniel Merkle, Martin Middendorf:
  An Algorithm for Inferring Mitogenome Rearrangements in a Phylogenetic Tree. 143-157
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• Sèverine Bérard, Annie Chateau, Cedric Chauve, Christophe Paul, Eric Tannier:
  Perfect DCJ Rearrangement. 158-169
  Electronic Edition (link) BibTeX
• Sophia Yancopoulos, Richard Friedberg:
  Sorting Genomes with Insertions, Deletions and Duplications by DCJ. 170-183
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• Andrew Wei Xu:
  A Fast and Exact Algorithm for the Median of Three Problem-A Graph Decomposition Approach. 184-197
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• Denis Bertrand, Mathieu Blanchette, Nadia El-Mabrouk:
  A Phylogenetic Approach to Genetic Map Refinement. 198-210
  Electronic Edition (link) BibTeX
• Michal Ozery-Flato, Ron Shamir:
  Sorting Cancer Karyotypes by Elementary Operations. 211-225
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• Anne Bergeron, Julia Mixtacki, Jens Stoye:
  On Computing the Breakpoint Reuse Rate in Rearrangement Scenarios. 226-240
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• Krister M. Swenson, Yu Lin, Vaibhav Rajan, Bernard M. E. Moret:
  Hurdles Hardly Have to Be Heeded. 241-251
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• David Sankoff, Chunfang Zheng, P. Kerr Wall, Claude W. dePamphilis, James Leebens-Mack, Victor A. Albert:
  Internal Validation of Ancestral Gene Order Reconstruction in Angiosperm Phylogeny. 252-264
  Electronic Edition (link) BibTeX