2008 |
22 | EE | Pekka Ruusuvuori,
Jenni Seppälä,
Timo Erkkilä,
Antti Lehmussola,
Jaakko A. Puhakka,
Olli Yli-Harja:
Efficient automated method for image-based classification of microbial cells.
ICPR 2008: 1-4 |
21 | EE | Alireza Akhbardeh,
Nikhil,
Perttu E. Koskinen,
Olli Yli-Harja:
Towards the experimental evaluation of novel supervised fuzzy adaptive resonance theory for pattern classification.
Pattern Recognition Letters 29(8): 1082-1093 (2008) |
2007 |
20 | EE | Antti Lehmussola,
Pekka Ruusuvuori,
J. Selinummi,
Heikki Huttunen,
Olli Yli-Harja:
Computational Framework for Simulating Fluorescence Microscope Images With Cell Populations.
IEEE Trans. Med. Imaging 26(7): 1010-1016 (2007) |
2006 |
19 | EE | Antti Lehmussola,
Pekka Ruusuvuori,
Olli Yli-Harja:
Evaluating the performance of microarray segmentation algorithms.
Bioinformatics 22(23): 2910-2917 (2006) |
18 | EE | Antti Saarinen,
Marja-Leena Linne,
Olli Yli-Harja:
Modeling single neuron behavior using stochastic differential equations.
Neurocomputing 69(10-12): 1091-1096 (2006) |
17 | EE | Antti Pettinen,
Olli Yli-Harja,
Marja-Leena Linne:
Comparison of automated parameter estimation methods for neuronal signaling networks.
Neurocomputing 69(10-12): 1371-1374 (2006) |
16 | EE | Harri Lähdesmäki,
Sampsa Hautaniemi,
Ilya Shmulevich,
Olli Yli-Harja:
Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks.
Signal Processing 86(4): 814-834 (2006) |
2005 |
15 | EE | Antti Lehmussola,
Pekka Ruusuvuori,
Olli Yli-Harja:
Exploring subjective image quality through isopreference curves.
ICIP (1) 2005: 413-416 |
14 | EE | Miika Ahdesmäki,
Harri Lähdesmäki,
Ronald K. Pearson,
Heikki Huttunen,
Olli Yli-Harja:
Robust detection of periodic time series measured from biological systems.
BMC Bioinformatics 6: 117 (2005) |
13 | EE | Harri Lähdesmäki,
Ilya Shmulevich,
Valerie Dunmire,
Olli Yli-Harja,
Wei Zhang:
In silico microdissection of microarray data from heterogeneous cell populations.
BMC Bioinformatics 6: 54 (2005) |
12 | EE | Antti Pettinen,
Tommi Aho,
Olli-Pekka Smolander,
Tiina Manninen,
Antti Saarinen,
Kaisa-Leena Taattola,
Olli Yli-Harja,
Marja-Leena Linne:
Simulation tools for biochemical networks: evaluation of performance and usability.
Bioinformatics 21(3): 357-363 (2005) |
11 | EE | Antti Niemistö,
Valerie Dunmire,
Olli Yli-Harja,
Wei Zhang,
Ilya Shmulevich:
Robust quantification of in vitro angiogenesis through image analysis.
IEEE Trans. Med. Imaging 24(4): 549-553 (2005) |
2003 |
10 | EE | Ronald K. Pearson,
Harri Lähdesmäki,
Heikki Huttunen,
Olli Yli-Harja:
Detecting Periodicity in Nonideal Datasets.
SDM 2003 |
9 | | Reija Autio,
Sampsa Hautaniemi,
Päivikki Kauraniemi,
Olli Yli-Harja,
Jaakko Astola,
Maija Wolf,
Anne Kallioniemi:
CGH-Plotter: MATLAB toolbox for CGH-data analysis.
Bioinformatics 19(13): 1714-1715 (2003) |
8 | | Sampsa Hautaniemi,
Henrik Edgren,
Petri Vesanen,
Maija Wolf,
Anna-Kaarina Järvinen,
Olli Yli-Harja,
Jaakko Astola,
Olli-P. Kallioniemi,
Outi Monni:
A novel strategy for microarray quality control using Bayesian networks.
Bioinformatics 19(16): 2031-2038 (2003) |
7 | EE | Harri Lähdesmäki,
Ilya Shmulevich,
Olli Yli-Harja:
On Learning Gene Regulatory Networks Under the Boolean Network Model.
Machine Learning 52(1-2): 147-167 (2003) |
6 | EE | Sampsa Hautaniemi,
Olli Yli-Harja,
Jaakko Astola,
Päivikki Kauraniemi,
Anne Kallioniemi,
Maija Wolf,
Jimmy Ruiz,
Spyro Mousses,
Olli-P. Kallioniemi:
Analysis and Visualization of Gene Expression Microarray Data in Human Cancer Using Self-Organizing Maps.
Machine Learning 52(1-2): 45-66 (2003) |
5 | EE | Harri Lähdesmäki,
Heikki Huttunen,
Tommi Aho,
Marja-Leena Linne,
Jari Niemi,
Juha Kesseli,
Ronald K. Pearson,
Olli Yli-Harja:
Estimation and inversion of the effects of cell population asynchrony in gene expression time-series.
Signal Processing 83(4): 835-858 (2003) |
2001 |
4 | EE | Pertti Koivisto,
Olli Yli-Harja,
Antti Niemistö,
Ilya Shmulevich:
Breakdown probabilities of recursive stack filters.
Signal Processing 81(1): 227-231 (2001) |
3 | EE | Olli Yli-Harja,
Pertti Koivisto,
J. Andrew Bangham,
Gavin C. Cawley,
Richard Harvey,
Ilya Shmulevich:
Simplified implementation of the recursive median sieve.
Signal Processing 81(7): 1565-1570 (2001) |
1999 |
2 | | Olli Yli-Harja,
Ilya Shmulevich,
Kjell Lemström:
Graph-based smoothing of class data with applications in musical key finding.
NSIP 1999: 311-315 |
1 | | Olli Yli-Harja,
J. Andrew Bangham,
Richard Harvey,
Richard V. Aldridge:
Correlation properties of cascaded recursive median filters.
NSIP 1999: 491-495 |