2008 |
8 | EE | Andreas Weidemann,
Stefan Richter,
Matthias Stein,
Sven Sahle,
Ralph Gauges,
Razif R. Gabdoulline,
Irina Surovtsova,
Nils Semmelrock,
Bruno Besson,
Isabel Rojas,
Rebecca C. Wade,
Ursula Kummer:
SYCAMORE - a systems biology computational analysis and modeling research environment.
Bioinformatics 24(12): 1463-1464 (2008) |
2006 |
7 | EE | Irina Surovtsova,
Sven Sahle,
Jürgen Pahle,
Ursula Kummer:
Approaches to complexity reduction in a systems biology research environment (SYCAMORE).
Winter Simulation Conference 2006: 1683-1689 |
6 | EE | Sven Sahle,
Ralph Gauges,
Jürgen Pahle,
Natalia Simus,
Ursula Kummer,
Stefan Hoops,
Christine Lee,
Mudita Singhal,
Liang Xu,
Pedro Mendes:
Simulation of biochemical networks using COPASI: a complex pathway simulator.
Winter Simulation Conference 2006: 1698-1706 |
5 | EE | Stefan Hoops,
Sven Sahle,
Ralph Gauges,
Christine Lee,
Jürgen Pahle,
Natalia Simus,
Mudita Singhal,
Liang Xu,
Pedro Mendes,
Ursula Kummer:
COPASI - a COmplex PAthway SImulator.
Bioinformatics 22(24): 3067-3074 (2006) |
2005 |
4 | EE | Katja Wegner,
Ursula Kummer:
A new dynamical layout algorithm for complex biochemical reaction networks.
BMC Bioinformatics 6: 212 (2005) |
3 | EE | Jürgen Zobeley,
Dirk Lebiedz,
Julia Kammerer,
Anton Ishmurzin,
Ursula Kummer:
A New Time-Dependent Complexity Reduction Method for Biochemical Systems.
T. Comp. Sys. Biology 1: 90-110 (2005) |
2004 |
2 | EE | Katja Wegner,
Stephan Jansen,
Stefan Wuchty,
Ralph Gauges,
Ursula Kummer:
combAlign: A protein sequence comparison algorithm considering recombinations.
In Silico Biology 4: (2004) |
2003 |
1 | | Michael Hucka,
Andrew Finney,
Herbert M. Sauro,
H. Bolouri,
John C. Doyle,
Hiroaki Kitano,
Adam P. Arkin,
Benjamin J. Bornstein,
D. Bray,
A. Cornish-Bowden,
A. A. Cuellar,
Serge Dronov,
Ernst Dieter Gilles,
Martin Ginkel,
Victoria Gor,
Igor Goryanin,
W. J. Hedley,
T. Charles Hodgman,
J. H. Hofmeyr,
Peter J. Hunter,
Nick S. Juty,
J. L. Kasberger,
Andreas Kremling,
Ursula Kummer,
Nicolas Le Novère,
Leslie M. Loew,
D. Lucio,
Pedro Mendes,
E. Minch,
Eric Mjolsness,
Yoichi Nakayama,
M. R. Nelson,
P. F. Nielsen,
T. Sakurada,
James C. Schaff,
Bruce E. Shapiro,
Thomas Simon Shimizu,
Hugh D. Spence,
Jörg Stelling,
Koichi Takahashi,
Masaru Tomita,
J. Wagner,
J. Wang:
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
Bioinformatics 19(4): 524-531 (2003) |