2008 |
37 | EE | Sun Kim,
Meng Li,
Hyun-il Henry Paik,
Kenneth P. Nephew,
Huidong Shi,
Robin Kramer,
Dong Xu,
T.-H. Huang:
Predicting DNA Methylation Susceptibility Using CpG Flanking Sequences.
Pacific Symposium on Biocomputing 2008: 315-326 |
36 | EE | Meng Li,
Hyun-il Henry Paik,
Curtis Balch,
Yoosung Kim,
Lang Li,
Tim H-M. Huang,
Kenneth P. Nephew,
Sun Kim:
Enriched transcription factor binding sites in hypermethylated gene promoters in drug resistant cancer cells.
Bioinformatics 24(16): 1745-1748 (2008) |
35 | EE | Jeong-Hyeon Choi,
Sun Kim,
Haixu Tang,
Justen Andrews,
Don G. Gilbert,
John Colbourne:
A machine-learning approach to combined evidence validation of genome assemblies.
Bioinformatics 24(6): 744-750 (2008) |
2007 |
34 | EE | Chan-Hoon Park,
Soo-Jin Kim,
Sun Kim,
Dong-Yeon Cho,
Byoung-Tak Zhang:
Finding Cancer-Related Gene Combinations Using a Molecular Evolutionary Algorithm.
BIBE 2007: 158-163 |
33 | EE | Sun Kim,
Ankita Bhan,
Bharath K. Maryada,
Kwangmin Choi,
Yves V. Brun:
EGGS: Extraction of Gene Clusters Using Genome Context Based Sequence Matching Techniques.
BIBM 2007: 23-28 |
32 | EE | Sun Kim,
Soo-Jin Kim,
Byoung-Tak Zhang:
Evolving hypernetwork classifiers for microRNA expression profile analysis.
IEEE Congress on Evolutionary Computation 2007: 313-319 |
31 | | Haixu Tang,
Sun Kim:
Bioinformatics: Mining the Massive Data from High Throughput Genomics Experiments.
Analysis of Biological Data: A Soft Computing Approach 2007: 3-24 |
30 | EE | Seung-Hee Bae,
Haixu Tang,
Jing Wu,
Jun Xie,
Sun Kim:
dPattern: transcription factor binding site (TFBS) discovery in human genome using a discriminative pattern analysis.
Bioinformatics 23(19): 2619-2621 (2007) |
2006 |
29 | | Mehmet M. Dalkilic,
Sun Kim,
Jiong Yang:
Data Mining and Bioinformatics, First International Workshop, VDMB 2006, Seoul, Korea, September 11, 2006, Revised Selected Papers
Springer 2006 |
28 | EE | Sun Kim,
Byoung-Tak Zhang:
Human Papillomavirus Risk Type Classification from Protein Sequences Using Support Vector Machines.
EvoWorkshops 2006: 57-66 |
27 | EE | Kwangmin Choi,
Amit Saple,
Sun Kim:
Genome Data Type: a Vehicle to Deliver a Genome Comparison System on the Web.
ICDM Workshops 2006: 142-146 |
26 | EE | Sun Kim,
Jae-Hong Eom:
Prediction of the Human Papillomavirus Risk Types Using Gap-Spectrum Kernels.
ISNN (2) 2006: 710-715 |
25 | EE | Jae-Hong Eom,
Sun Kim,
Seong-Hwan Kim,
Byoung-Tak Zhang:
A Tree Kernel-Based Method for Protein-Protein Interaction Mining from Biomedical Literature.
KDLL 2006: 42-52 |
24 | EE | Rupali Patwardhan,
Haixu Tang,
Sun Kim,
Mehmet M. Dalkilic:
An Approximate de Bruijn Graph Approach to Multiple Local Alignment and Motif Discovery in Protein Sequences.
VDMB 2006: 158-169 |
23 | EE | Lang Li,
Alfred S. L. Cheng,
Victor X. Jin,
Henry H. Paik,
Meiyun Fan,
Xiaoman Li,
Wei Zhang,
Jason Robarge,
Curtis Balch,
Ramana V. Davuluri,
Sun Kim,
Tim Hui-Ming Huang,
Kenneth P. Nephew:
A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha.
Bioinformatics 22(18): 2210-2216 (2006) |
22 | EE | Bin Song,
Jeong-Hyeon Choi,
Guangyu Chen,
Jacek Szymanski,
Guo-Qiang Zhang,
Anthony K. H. Tung,
Jaewoo Kang,
Sun Kim,
Jiong Yang:
ARCS: an aggregated related column scoring scheme for aligned sequences.
Bioinformatics 22(19): 2326-2332 (2006) |
21 | EE | Do-Hoon Lee,
Jeong-Hyeon Choi,
Mehmet M. Dalkilic,
Sun Kim:
COMPAM : visualization of combining pairwise alignments for multiple genomes.
Bioinformatics 22(2): 242-244 (2006) |
20 | EE | Takuma Tsukahara,
Sun Kim,
Milton W. Taylor:
REFINEMENT: A search framework for the identification of interferon-responsive elements in DNA sequences - a case study with ISRE and GAS.
Computational Biology and Chemistry 30(2): 134-147 (2006) |
19 | EE | Sun Kim,
Jason Lee:
BAG: a graph theoretic sequence clustering algorithm.
IJDMB 1(2): 178-200 (2006) |
2005 |
18 | EE | Sun Kim,
Jeong-Hyeon Choi,
Jiong Yang:
Gene Teams with Relaxed Proximity Constraint.
CSB 2005: 44-55 |
17 | EE | Kwangmin Choi,
Jeong-Hyeon Choi,
Amit Saple,
Zhiping Wang,
Jason Lee,
Sun Kim:
PLATCOM: a Platform for Computational Comparative Genomics on the Web.
CSB Workshops 2005: 27-30 |
16 | EE | Jason Lee,
Sun Kim:
Cluster Utility: A New Metric for Clustering Biological Sequences.
CSB Workshops 2005: 45-46 |
15 | EE | Kwangmin Choi,
Jeong-Hyeon Choi,
Amit Saple,
Zhiping Wang,
Jason Lee,
Sun Kim:
PLATCOM: Current Status and Plan for the Next Stages.
DILS 2005: 300-304 |
14 | EE | Sun Kim,
Kyung-shik Shin,
Kyungdo Park:
An Application of Support Vector Machines for Customer Churn Analysis: Credit Card Case.
ICNC (2) 2005: 636-647 |
13 | EE | Kwangmin Choi,
Yu Ma,
Jeong-Hyeon Choi,
Sun Kim:
PLATCOM: a Platform for Computational Comparative Genomics.
Bioinformatics 21(10): 2514-2516 (2005) |
12 | EE | Jeong-Hyeon Choi,
Hwan-Gue Cho,
Sun Kim:
GAME: A simple and efficient whole genome alignment method using maximal exact match filtering.
Computational Biology and Chemistry 29(3): 244-253 (2005) |
2004 |
11 | EE | Jeong-Hyeon Choi,
Kwangmin Choi,
Hwan-Gue Cho,
Sun Kim:
Multiple Genome Alignment by Clustering Pairwise Matches.
Comparative Genomics 2004: 30-41 |
10 | EE | In-Hee Lee,
Sun Kim,
Byoung-Tak Zhang:
Multi-objective Evolutionary Probe Design Based on Thermodynamic Criteria for HPV Detection.
PRICAI 2004: 742-750 |
9 | EE | Zhiping Wang,
Mehmet M. Dalkilic,
Sun Kim:
Guiding motif discovery by iterative pattern refinement.
SAC 2004: 162-166 |
2003 |
8 | | Irfan Gunduz,
Sihui Zhao,
Mehmet M. Dalkilic,
Sun Kim:
Motif Discovery from Large Number of Sequences: A Case Study with Disease Resistance Genes in Arabidopsos thaliana.
METMBS 2003: 29-34 |
7 | | Sun Kim:
Graph Theoretic Sequence Clustering Algorithms and Their Applications to Genome Comparison.
Computational Biology and Genome Informatics 2003: 81-116 |
6 | | Sun Kim,
Byoung-Tak Zhang:
Genetic Mining of HTML Structures for Effective Web-Document Retrieval.
Appl. Intell. 18(3): 243-256 (2003) |
2001 |
5 | EE | Sun Kim,
Li Liao,
Jean-Francois Tomb:
A probabilistic approach to sequence assembly validation.
BIOKDD 2001: 38-43 |
2000 |
4 | EE | Sun Kim,
Byoung-Tak Zhang:
Web-Document Retrieval by Genetic Learning of Importance Factors for HTML Tags.
PRICAI Workshop on Text and Web Mining 2000: 13-23 |
1999 |
3 | EE | Dong-Ho Shin,
Yu-Hwan Kim,
Sun Kim,
Jae-Hong Eom,
Hyung-Joo Shin,
Byoung-Tak Zhang:
SCAI TREC-8 Experiments.
TREC 1999 |
2 | EE | Sun Kim:
A New String-Pattern Matching Algorithm Using Partitioning and Hashing Efficiently.
ACM Journal of Experimental Algorithmics 4: 2 (1999) |
1994 |
1 | | Sun Kim,
Hantao Zhang:
ModGen: Theorem Proving by Model Generation.
AAAI 1994: 162-167 |