2006 |
11 | EE | David Chiang,
Aravind K. Joshi,
Ken A. Dill:
A Grammatical Theory for the Conformational Changes of Simple Helix Bundles.
Journal of Computational Biology 13(1): 21-42 (2006) |
2005 |
10 | EE | Evangelos A. Coutsias,
Chaok Seok,
Ken A. Dill:
Rotational superposition and least squares: The SVD and quaternions approaches yield identical results. Reply to the preceding comment by G. Kneller.
Journal of Computational Chemistry 26(15): 1663-1665 (2005) |
2004 |
9 | EE | Evangelos A. Coutsias,
Chaok Seok,
Matthew P. Jacobson,
Ken A. Dill:
A kinematic view of loop closure.
Journal of Computational Chemistry 25(4): 510-528 (2004) |
2003 |
8 | EE | Guang Song,
Shawna L. Thomas,
Ken A. Dill,
J. Martin Scholtz,
Nancy M. Amato:
A Path Planning-Based Study of Protein Folding with a Case Study of Hairpin Formation in Protein G and L.
Pacific Symposium on Biocomputing 2003: 240-251 |
7 | EE | Nancy M. Amato,
Ken A. Dill,
Guang Song:
Using Motion Planning to Map Protein Folding Landscapes and Analyze Folding Kinetics of Known Native Structures.
Journal of Computational Biology 10(3/4): 239-255 (2003) |
6 | EE | Chaok Seok,
J. Ben Rosen,
John D. Chodera,
Ken A. Dill:
MOPED: Method for optimizing physical energy parameters using decoys.
Journal of Computational Chemistry 24(1): 89-97 (2003) |
2002 |
5 | EE | Nancy M. Amato,
Ken A. Dill,
Guang Song:
Using motion planning to map protein folding landscapes and analyze folding kinetics of known native structures.
RECOMB 2002: 2-11 |
4 | EE | Keith D. Ball,
Burak Erman,
Ken A. Dill:
The elastic net algorithm and protein structure prediction.
Journal of Computational Chemistry 23(1): 77-83 (2002) |
1999 |
3 | EE | K. W. Foreman,
Andrew T. Phillips,
J. Ben Rosen,
Ken A. Dill:
Comparing search strategies for finding global optima on energy landscapes.
Journal of Computational Chemistry 20(14): 1527-1532 (1999) |
1997 |
2 | EE | Ken A. Dill,
Andrew T. Phillips,
J. Ben Rosen:
Protein structure prediction and potential energy landscape analysis using continuous global minimization.
RECOMB 1997: 109-117 |
1 | | Ken A. Dill,
Andrew T. Phillips,
J. Ben Rosen:
Protein Structure and Energy Landscape Dependence on Sequence Using a Continuous Energy Function.
Journal of Computational Biology 4(3): 227-240 (1997) |