Charles L. Brooks III

2009
33	EE	Gernot Frenking, Charles L. Brooks III, Shigeyoshi Sakaki: Editors' note. Journal of Computational Chemistry 30(1): 1 (2009)
2008
32	EE	Mark A. Olson, Michael Feig, Charles L. Brooks III: Prediction of protein loop conformations using multiscale modeling methods with physical energy scoring functions. Journal of Computational Chemistry 29(5): 820-831 (2008)
2007
31	EE	Michela Taufer, Andre Kerstens, Trilce Estrada, David A. Flores, Richard Zamudio, Patricia J. Teller, R. Armen, Charles L. Brooks III: Moving Volunteer Computing towards Knowledge-Constructed, Dynamically-Adaptive Modeling and Scheduling. IPDPS 2007: 1-8
30	EE	Charles L. Brooks III, Gernot Frenking, Shigeyoshi Sakaki: Letter from the Editors. Journal of Computational Chemistry 28(11): 1775 (2007)
2006
29	EE	Michela Taufer, Chahm An, Andreas Kerstens, Charles L. Brooks III: Predictor@Home: A "Protein Structure Prediction Supercomputer' Based on Global Computing. IEEE Trans. Parallel Distrib. Syst. 17(8): 786-796 (2006)
28	EE	Craig M. Shepherd, Ian A. Borelli, Gabriel Lander, Padmaja Natarajan, Vinay Siddavanahalli, Chandrajit L. Bajaj, John E. Johnson, Charles L. Brooks III, Vijay S. Reddy: VIPERdb: a relational database for structural virology. Nucleic Acids Research 34(Database-Issue): 386-389 (2006)
2005
27	EE	Michela Taufer, David P. Anderson, Pietro Cicotti, Charles L. Brooks III: Homogeneous Redundancy: a Technique to Ensure Integrity of Molecular Simulation Results Using Public Computing. IPDPS 2005
26	EE	Michela Taufer, Chahm An, Andreas Kerstens, Charles L. Brooks III: Predictor@Home: A "Protein Structure Prediction Supercomputer" Based on Public-Resource Computing. IPDPS 2005
25	EE	Michela Taufer, Patricia J. Teller, David P. Anderson, Charles L. Brooks III: Metrics for Effective Resource Management in Global Computing Environments. e-Science 2005: 204-211
24	EE	Michela Taufer, Michael Crowley, Daniel J. Price, Andrew A. Chien, Charles L. Brooks III: Study of a highly accurate and fast protein-ligand docking method based on molecular dynamics. Concurrency and Computation: Practice and Experience 17(14): 1627-1641 (2005)
23	EE	Daniel J. Price, Charles L. Brooks III: Detailed considerations for a balanced and broadly applicable force field: A study of substituted benzenes modeled with OPLS-AA. Journal of Computational Chemistry 26(14): 1529-1541 (2005)
22	EE	Jianhan Chen, Wonpil Im, Charles L. Brooks III: Application of torsion angle molecular dynamics for efficient sampling of protein conformations. Journal of Computational Chemistry 26(15): 1565-1578 (2005)
21	EE	Charles L. Brooks III: Editorial. Journal of Computational Chemistry 26(16): 1667 (2005)
2004
20	EE	Derrick Kondo, Michela Taufer, Charles L. Brooks III, Henri Casanova, Andrew A. Chien: Characterizing and Evaluating Desktop Grids: An Empirical Study. IPDPS 2004
19	EE	Michela Taufer, Michael Crowley, Daniel J. Price, Andrew A. Chien, Charles L. Brooks III: Study of a Highly Accurate and Fast Protein-Ligand Docking Algorithm Based on Molecular Dynamics. IPDPS 2004
18	EE	Anand Natrajan, Michael Crowley, Nancy Wilkins-Diehr, Marty A. Humphrey, Anthony D. Fox, Andrew S. Grimshaw, Charles L. Brooks III: Studying protein folding on the Grid: experiences using CHARMM on NPACI resources under Legion. Concurrency and Computation: Practice and Experience 16(4): 385-397 (2004)
17	EE	Sandeep Patel, Charles L. Brooks III: CHARMM fluctuating charge force field for proteins: I parameterization and application to bulk organic liquid simulations. Journal of Computational Chemistry 25(1): 1-16 (2004)
16	EE	Alexander D. MacKerell Jr., Michael Feig, Charles L. Brooks III: Extending the treatment of backbone energetics in protein force fields: Limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations. Journal of Computational Chemistry 25(11): 1400-1415 (2004)
15	EE	Sandeep Patel, Alexander D. MacKerell Jr., Charles L. Brooks III: CHARMM fluctuating charge force field for proteins: II Protein/solvent properties from molecular dynamics simulations using a nonadditive electrostatic model. Journal of Computational Chemistry 25(12): 1504-1514 (2004)
14	EE	Michael Feig, Alexey Onufriev, Michael S. Lee, Wonpil Im, David A. Case, Charles L. Brooks III: Performance comparison of generalized born and Poisson methods in the calculation of electrostatic solvation energies for protein structures. Journal of Computational Chemistry 25(2): 265-284 (2004)
13	EE	Olgun Guvench, Charles L. Brooks III: Efficient approximate all-atom solvent accessible surface area method parameterized for folded and denatured protein conformations. Journal of Computational Chemistry 25(8): 1005-1014 (2004)
2003
12	EE	Michael S. Lee, Michael Feig, Freddie R. Salsbury Jr., Charles L. Brooks III: New analytic approximation to the standard molecular volume definition and its application to generalized Born calculations. Journal of Computational Chemistry 24(11): 1348-1356 (2003)
11	EE	Guosheng Wu, Daniel H. Robertson, Charles L. Brooks III, Michal Vieth: Detailed analysis of grid-based molecular docking: A case study of CDOCKER - A CHARMm-based MD docking algorithm. Journal of Computational Chemistry 24(13): 1549-1562 (2003)
10	EE	Wonpil Im, Michael S. Lee, Charles L. Brooks III: Generalized born model with a simple smoothing function. Journal of Computational Chemistry 24(14): 1691-1702 (2003)
9	EE	Michael S. Lee, Michael Feig, Freddie R. Salsbury Jr., Charles L. Brooks III: New analytic approximation to the standard molecular volume definition and its application to generalized born calculations - Erratum. Journal of Computational Chemistry 24(14): 1821 (2003)
8		Badry D. Bursulaya, Maxim Totrov, Ruben Abagyan, Charles L. Brooks III: Comparative study of several algorithms for flexible ligand docking. Journal of Computer-Aided Molecular Design 17(11): 755-763 (2003)
2002
7	EE	Brian N. Dominy, Charles L. Brooks III: Identifying native-like protein structures using physics-based potentials. Journal of Computational Chemistry 23(1): 147-160 (2002)
6	EE	Daniel J. Price, Charles L. Brooks III: Modern protein force fields behave comparably in molecular dynamics simulations. Journal of Computational Chemistry 23(11): 1045-1057 (2002)
2001
5	EE	Anand Natrajan, Anthony D. Fox, Marty A. Humphrey, Andrew S. Grimshaw, Nancy Wilkins-Diehr, Michael Crowley, Charles L. Brooks III: Studying Protein Folding on the Grid: Experiences Using CHARMM on NPACI Resources under Legion. HPDC 2001: 14-21
1998
4	EE	Michal Vieth, Jonathan D. Hirst, Andrzej Kolinski, Charles L. Brooks III: Assessing energy functions for flexible docking. Journal of Computational Chemistry 19(14): 1612-1622 (1998)
3	EE	Michal Vieth, Jonathan D. Hirst, Brian N. Dominy, Heidi Daigler, Charles L. Brooks III: Assessing search strategies for flexible docking. Journal of Computational Chemistry 19(14): 1623-1631 (1998)
1995
2		William S. Young, Charles L. Brooks III: Dynamic Load Balancing Algorithms for Replicated Data Molecular Dynamics. Journal of Computational Chemistry 16(6): 715-722 (1995)
1994
1		William S. Young, Charles L. Brooks III: Implementation of a Data Parallel, Logical Domain Decomposition Method for Interparticle Interactions in Molecular Dynamics of Structured Molecular Fluids. Journal of Computational Chemistry 15(1): 44-53 (1994)

Coauthor Index

1	Ruben Abagyan	[8]
2	Chahm An	[26] [29]
3	David P. Anderson	[25] [27]
4	R. Armen	[31]
5	Chandrajit L. Bajaj	[28]
6	Ian A. Borelli	[28]
7	Badry D. Bursulaya	[8]
8	Henri Casanova	[20]
9	David A. Case	[14]
10	Jianhan Chen	[22]
11	Andrew A. Chien	[19] [20] [24]
12	Pietro Cicotti	[27]
13	Michael Crowley	[5] [18] [19] [24]
14	Heidi Daigler	[3]
15	Brian N. Dominy	[3] [7]
16	Trilce Estrada	[31]
17	Michael Feig	[9] [12] [14] [16] [32]
18	David A. Flores	[31]
19	Anthony D. Fox	[5] [18]
20	Gernot Frenking	[30] [33]
21	Andrew S. Grimshaw	[5] [18]
22	Olgun Guvench	[13]
23	Jonathan D. Hirst	[3] [4]
24	Marty Humphrey (Marty A. Humphrey)	[5] [18]
25	Wonpil Im	[10] [14] [22]
26	John E. Johnson	[28]
27	Andre Kerstens	[31]
28	Andreas Kerstens	[26] [29]
29	Andrzej Kolinski	[4]
30	Derrick Kondo	[20]
31	Gabriel Lander	[28]
32	Michael S. Lee	[9] [10] [12] [14]
33	Alexander D. MacKerell Jr.	[15] [16]
34	Padmaja Natarajan	[28]
35	Anand Natrajan	[5] [18]
36	Mark A. Olson	[32]
37	Alexey Onufriev	[14]
38	Sandeep Patel	[15] [17]
39	Daniel J. Price	[6] [19] [23] [24]
40	Vijay S. Reddy	[28]
41	Daniel H. Robertson	[11]
42	Shigeyoshi Sakaki	[30] [33]
43	Freddie R. Salsbury Jr.	[9] [12]
44	Craig M. Shepherd	[28]
45	Vinay Siddavanahalli	[28]
46	Michela Taufer	[19] [20] [24] [25] [26] [27] [29] [31]
47	Patricia J. Teller	[25] [31]
48	Maxim Totrov	[8]
49	Michal Vieth	[3] [4] [11]
50	Nancy Wilkins-Diehr	[5] [18]
51	Guosheng Wu	[11]
52	William S. Young	[1] [2]
53	Richard Zamudio	[31]

Colors in the list of coauthors