| 2008 |
|---|
| 7 | EE | Ramu Anandakrishnan,
Alexey Onufriev:
Analysis of Basic Clustering Algorithms for Numerical Estimation of Statistical Averages in Biomolecules.
Journal of Computational Biology 15(2): 165-184 (2008) |
| 2007 |
|---|
| 6 | EE | Nilanjan Saha,
Layne T. Watson,
Karen Kafadar,
Naren Ramakrishnan,
Alexey Onufriev,
Shrinivasrao P. Mane,
Cecilia Vasquez-Robinet:
Validation and Estimation of Parameters for a General Probabilistic Model of the PCR Process.
Journal of Computational Biology 14(1): 97-112 (2007) |
| 2006 |
|---|
| 5 | EE | Nilanjan Saha,
Layne T. Watson,
Karen Kafadar,
Alexey Onufriev,
Naren Ramakrishnan,
Cecilia Vasquez-Robinet,
Jonathan I. Watkinson:
A general probabilistic model of the PCR process.
Applied Mathematics and Computation 182(1): 232-243 (2006) |
| 2005 |
|---|
| 4 | EE | David A. Case,
Thomas E. Cheatham III,
Tom Darden,
Holger Gohlke,
Ray Luo,
Kenneth M. Merz Jr.,
Alexey Onufriev,
Carlos Simmerling,
Bing Wang,
Robert J. Woods:
The Amber biomolecular simulation programs.
Journal of Computational Chemistry 26(16): 1668-1688 (2005) |
| 3 | EE | John C. Gordon,
Jonathan B. Myers,
Timothy Folta,
Valia Shoja,
Lenwood S. Heath,
Alexey Onufriev:
H++: a server for estimating pKas and adding missing hydrogens to macromolecules.
Nucleic Acids Research 33(Web-Server-Issue): 368-371 (2005) |
| 2004 |
|---|
| 2 | EE | Michael Feig,
Alexey Onufriev,
Michael S. Lee,
Wonpil Im,
David A. Case,
Charles L. Brooks III:
Performance comparison of generalized born and Poisson methods in the calculation of electrostatic solvation energies for protein structures.
Journal of Computational Chemistry 25(2): 265-284 (2004) |
| 2002 |
|---|
| 1 | EE | Alexey Onufriev,
David A. Case,
Donald Bashford:
Effective Born radii in the generalized Born approximation: The importance of being perfect.
Journal of Computational Chemistry 23(14): 1297-1304 (2002) |
