11. DNA 2005: London, ON, Canada

• Yuliy M. Baryshnikov, Edward G. Coffman Jr., Nadrian C. Seeman, Teddy Yimwadsana:
  Self-correcting Self-assembly: Growth Models and the Hammersley Process. 1-11
  Electronic Edition (link) BibTeX
• Matteo Cavaliere, Natasa Jonoska, Peter Leupold:
  Recognizing DNA Splicing. 12-26
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• Mark Daley, Ian McQuillan:
  On Computational Properties of Template-Guided DNA Recombination. 27-37
  Electronic Edition (link) BibTeX
• Joseph Farfel, Darko Stefanovic:
  Towards Practical Biomolecular Computers Using Microfluidic Deoxyribozyme Logic Gate Networks. 38-54
  Electronic Edition (link) BibTeX
• Giuditta Franco, Vincenzo Manca, Cinzia Giagulli, Carlo Laudanna:
  DNA Recombination by XPCR. 55-66
  Electronic Edition (link) BibTeX
• Pierluigi Frisco, Christiaan Henkel, Szabolcs Tengely:
  An Algorithm for SAT Without an Extraction Phase. 67-80
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• Max H. Garzon, Vinhthuy T. Phan, Kiran C. Bobba, Raghuver Kontham:
  Sensitivity and Capacity of Microarray Encodings. 81-95
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• Tero Harju, Ion Petre, Vladimir Rogojin, Grzegorz Rozenberg:
  Simple Operations for Gene Assembly. 96-111
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• Oscar H. Ibarra, Andrei Paun:
  Counting Time in Computing with Cells. 112-128
  Electronic Edition (link) BibTeX
• Oscar H. Ibarra, Sara Woodworth:
  On Bounded Symport/Antiport P Systems. 129-143
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• Natasa Jonoska, Gregory L. McColm, Ana Staninska:
  Expectation and Variance of Self-assembled Graph Structures. 144-157
  Electronic Edition (link) BibTeX
• Lila Kari, Stavros Konstantinidis, Elena Losseva, Petr Sosík, Gabriel Thierrin:
  Hairpin Structures in DNA Words. 158-170
  Electronic Edition (link) BibTeX
• Atsushi Kijima, Satoshi Kobayashi:
  Efficient Algorithm for Testing Structure Freeness of Finite Set of Biomolecular Sequences. 171-180
  Electronic Edition (link) BibTeX
• Shankara Narayanan Krishna:
  Communicating Distributed H Systems: Optimal Results with Efficient Ways of Communication. 181-192
  Electronic Edition (link) BibTeX
• Junna Kuramochi, Yasubumi Sakakibara:
  Intensive In Vitro Experiments of Implementing and Executing Finite Automata in Test Tube. 193-202
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• Hirotaka Nakagawa, Kensaku Sakamoto, Yasubumi Sakakibara:
  Development of an In Vivo Computer Based on Escherichia coli. 203-212
  Electronic Edition (link) BibTeX
• Yusuke Ogura, Taro Beppu, Masahiro Takinoue, Akira Suyama, Jun Tanida:
  Control of DNA Molecules on a Microscopic Bead Using Optical Techniques for Photonic DNA Memory. 213-223
  Electronic Edition (link) BibTeX
• Kaoru Onodera, Takashi Yokomori:
  Linearizer and Doubler : Two Mappings to Unify Molecular Computing Models Based on DNA Complementarity. 224-235
  Electronic Edition (link) BibTeX
• Dario Pescini, Daniela Besozzi, Claudio Zandron, Giancarlo Mauri:
  Analysis and Simulation of Dynamics in Probabilistic P Systems. 236-247
  Electronic Edition (link) BibTeX
• Wendy K. Pogozelski, Matthew P. Bernard, Salvatore F. Priore, Anthony J. Macula:
  Experimental Validation of DNA Sequences for DNA Computing: Use of a SYBR Green I Assay. 248-256
  Electronic Edition (link) BibTeX
• John H. Reif, Sudheer Sahu, Peng Yin:
  Complexity of Graph Self-assembly in Accretive Systems and Self-destructible Systems. 257-274
  Electronic Edition (link) BibTeX
• Jennifer A. Sager, Darko Stefanovic:
  Designing Nucleotide Sequences for Computation: A Survey of Constraints. 275-289
  Electronic Edition (link) BibTeX
• Sudheer Sahu, Peng Yin, John H. Reif:
  A Self-assembly Model of Time-Dependent Glue Strength. 290-304
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• David Soloveichik, Erik Winfree:
  Complexity of Compact Proofreading for Self-assembled Patterns. 305-324
  Electronic Edition (link) BibTeX
• Koutaro Somei, Shohei Kaneda, Teruo Fujii, Satoshi Murata:
  A Microfluidic Device for DNA Tile Self-assembly. 325-335
  Electronic Edition (link) BibTeX
• Keiichiro Takahashi, Satsuki Yaegashi, Hiroyuki Asanuma, Masami Hagiya:
  Photo- and Thermoregulation of DNA Nanomachines. 336-346
  Electronic Edition (link) BibTeX
• Keiichiro Takahashi, Satsuki Yaegashi, Atsushi Kameda, Masami Hagiya:
  Chain Reaction Systems Based on Loop Dissociation of DNA. 347-358
  Electronic Edition (link) BibTeX
• Tsutomu Takeda, Hirotaka Ono, Kunihiko Sadakane, Masafumi Yamashita:
  A Local Search Based Barrier Height Estimation Algorithm for DNA Molecular Transitions. 359-370
  Electronic Edition (link) BibTeX
• Fumiaki Tanaka, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi:
  Specificity of Hybridization Between DNA Sequences Based on Free Energy. 371-379
  Electronic Edition (link) BibTeX
• Danny van Noort:
  A Poor Man's Microfluidic DNA Computer. 380-386
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• Bei Wang, Dimitris Papamichail, Steffen Mueller, Steven Skiena:
  Two Proteins for the Price of One: The Design of Maximally Compressed Coding Sequences. 387-398
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• Peng Yin, Sudheer Sahu, Andrew J. Turberfield, John H. Reif:
  Design of Autonomous DNA Cellular Automata. 399-416
  Electronic Edition (link) BibTeX
• Bernard Yurke, David C. Lin, Noshir A. Langrana:
  Use of DNA Nanodevices in Modulating the Mechanical Properties of Polyacrylamide Gels. 417-426
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• Byoung-Tak Zhang, Ha-Young Jang:
  Molecular Learning of wDNF Formulae. 427-437
  Electronic Edition (link) BibTeX