BIOCOMP 2006:
Las Vegas,
Nevada,
USA
Hamid R. Arabnia, Homayoun Valafar (Eds.):
Proceedings of the 2006 International Conference on Bioinformatics & Computational Biology, BIOCOMP'06, Las Vegas, Nevada, USA, June 26-29, 2006.
CSREA Press 2006, ISBN 1-60132-002-7 BibTeX
Sequence and Structure Alignment of Macro Molecules
Biomolecular Pathways and System Biology
Phylogenetic Reconstruction and Molecular Evolution
- Jay Urbain, Nazli Goharian:
A Relational Genomics Search Engine.
69-74 BibTeX
- Liying Cui, Feng Yue, Claude W. dePamphilis, Bernard M. E. Moret, Jijun Tang:
Inferring Ancestral Chloroplast Genomes with Inverted Repea.
75-81 BibTeX
- John Rose, Rishi Mukhopadhyay:
Evidence for Functional Protein Fragment Homology in Viral Genome Types.
82-86 BibTeX
- Bing Bing Zhou, Monther Tarawneh, Daniel Chu, Francis Wang, Chen Wang, Albert Y. Zomaya, Richard P. Brent:
On a New Quartet-Based Phylogeny Reconstruction Algorithm.
87-93 BibTeX
- Luis Fernández, Fernando Arroyo, Juan Castellanos, Jorge A. Tejedor, Ivan Garcia:
New Algorithms for Application of Evolution Rules based on Applicability Benchmarks.
94-102 BibTeX
Microarray Data Analysis and Gene Expression
- Vetria Byrd, Tarynn Witten:
Needs Assessment for Scientific Visualization of Multivariate, High-Dimensional Microarray Data.
103-109 BibTeX
- Rafal Kustra:
Reduced-rank Multivariate Model for Time-course Microarray Data.
110-116 BibTeX
- Meral Unal, Ismail Cakmak, Yildiz Aydin, Aysen Yumurtaci, Ahu Altinkut, Emel Yesil, Sema Karanlik, Hikmet Budak:
Data Mining of ESTs for Genetic Improvement of Salt Tolerance in Wheat.
117-124 BibTeX
- Hiroyuki Kuwahara, Chris J. Myers, Michael S. Samoilov:
Abstracted Stochastic Analysis of Type 1 Pili Expression in E.coli.
125-134 BibTeX
Gene Identification and Clustering
- Longde Yin, Chun-Hsi Huang:
A Heuristic Approach to Scoring Gene Clustering Algorithms.
135-141 BibTeX
- Cliff Han, Patrick Chain:
Finishing Repetitive Regions Automatically with Dupfinisher.
142-147 BibTeX
- Scott F. Smith:
Acceleration of Covariance Models for Non-coding RNA Search.
148-153 BibTeX
- Jing Zhao, Tian Xue, Boyu Yang, Kelly Williams, Alice R. Wattam, Rebecca Will, Bruce Sharp, Ron Kenyon, Oswald Crasta, Bruno W. S. Sobral:
Genome Annotation and Comparison System.
154-160 BibTeX
- Dina Sokol, Justin Tojeira:
Filtering Tandem Repeats in DNA Sequences.
161-167 BibTeX
- Hong Zhou, Yufang Wang, Xiao Zeng:
Fast and Complete Search of siRNA Off-target Sequences.
168-171 BibTeX
- Atiq Islam, Khan M. Iftekharuddin, David J. Russomanno:
Marker Gene Selection Evaluation in Brain Tumor Patients Using Parallel Coordinates.
172-176 BibTeX
Medical Diagnostic and Software Tools
- Beomjin Kim:
Automated Blood Volume Quantification from Color Doppler Images while Tracking the Conduit Motion.
177-181 BibTeX
- Yuriy Brun, Manoj Gopalkrishnan:
Toward In Vivo Disease Diagnosis and Treatment Using DNA.
182-186 BibTeX
- Baris Andirinli, Ali Tekin, Yasin Kapucu, I. Ilkay Boduroglu:
A Machine Learning Prototype for the Identification of Patients who are Not Likely to Respond to Medical Treatment of BPH with alpha-Blockers.
187-193 BibTeX
- Dinesh P. Mital, Shankar Srinivasan, Syed Haque, Radhika Uppalapati:
An Artificial Neural Network based Model to Analyze Malarial Data and Predict Organ Failure.
194-200 BibTeX
- Sebastian Guzmán, Juan Fernando Ospina:
Basic Reproductive Rate of a Spatial Epidemic Seir Model using Computer Algebra Software.
201-204 BibTeX
- Roman Andrushkiw, Yuriy Petunin, Lyudmila Ostapchenko, Natalya Boroday, Yulia Lozovskaya, Vasiliy Chekhun, Irina Dosenko:
Computer-Aided Cytogenetic Method of Breast Cancer Diagnosis, Part I - Decision Rule.
205-209 BibTeX
- Roman Andrushkiw, Dmitry Klyushin, Ekaterina Golubeva, Mikhail Pokoyoviy, Andrey Romanov:
Computer-Aided Cytogenetic Method of Breast Cancer Diagnosis, Part II - Test Criteria.
210-216 BibTeX
Application of Engineering Techniques and Mathematics in Medicine
- Dawei Hong, Shushuang Man, Daniel Shain, Joseph V. Martin:
Development of Maximized Total Capillary Surface: the quater power scaling law from developmental biology perspective.
217-221 BibTeX
- Naren Vira, Shaleen Vira:
Surgeon's Magic Wand: A Screen Pointing Interactive Method.
222-228 BibTeX
- Mikaël Bourhis, Vincent Rodin, Gabriel Querrec:
SPiC-MAS: A Multiagent Simulation of Stochastic pi-calculus Models.
229-235 BibTeX
- Sara Sharifi Sedeh, Reza Sharifi Sedeh, Keivan Navi:
Reducing Harmful Effects Of Road Excitations On Human Health By Designing Car Active Suspension Systems.
236-241 BibTeX
- Reza Sharifi Sedeh, Sara Sharifi Sedeh, Keivan Navi:
Using Car Semi-Active Suspension Systems To Decrease Undesirable Effects Of Road Excitations On Human Health.
242-250 BibTeX
Bioinformatics and Medical Informatics Software Tools
- Simon M. C. Yuen, Fu-Lai Chung, Robert Wing Pong Luk:
Fast Dictionary Lookup in Genomic Information Retrieval.
251-257 BibTeX
- Boyu Yang, Tian Xue, Jing Zhao, Chaitanya Kommidi, Jeetendra Soneja, Jian Li, Rebecca Will, Bruce Sharp, Ron Kenyon, Oswald Crasta, Bruno W. S. Sobral:
Bioinformatics Web Services.
258-264 BibTeX
- Patrick Bobbie, Renee Reams, Sandra Suther, C. Perry Brown:
Finding Molecular Signature of Prostate Cancer: An Algorithmic Approach.
265-269 BibTeX
- Karol Szafranski, Molly Megraw, Martin Reczko, Artemis G. Hatzigeorgiou:
Support Vector Machines for Predicting microRNA Hairpins.
270-276 BibTeX
- Gillian Pearce, Peter Wilson, Gill Jones, David Smith:
A Design for Software to Assist in the Rehabilitation of Stroke Patients.
277-284 BibTeX
Prediction of Structure and Dynamics of Macro Molecules
- Shih-Yen Ku, Yuh-Jyh Hu:
A Multi-strategy Approach to Protein Structural Alphabet Design.
285-291 BibTeX
- Nengchao Wang, Zhongjun Wang:
Study on Properties of Protein Folding Conformation Network.
292-295 BibTeX
- Jinmiao Chen, Narendra S. Chaudhari:
Statistical Analysis of Long-Range Interactions in Proteins.
296-302 BibTeX
- Mary Qu Yang, Jack Y. Yang:
Identification of Intrinsically Unstructured Regions in Proteins Using Primary Structure.
303-309 BibTeX
- John Manor, Peter Salamon, James Nulton, Joseph Mahaffy, Arlette Baljon, Terrence Frey:
Membrane Remodeling and Diffusion of Cytochrome C from a Geometrically Idealized Mitochondrial Crista.
310-314 BibTeX
- Aytug Tuncel, I. Halil Kavakli, Ozlem Keskin:
Structure Prediction of Potato Large Subunit ADP - Glucose Pyrophosphorylase.
315-321 BibTeX
- H. Eugene Stanley, David Teplow, Noel Lazo, Jose Borreguero, Brigita Urbanc, Alfonso Lam:
Discrete Molecular Dynamics Study of Alzheimer Amyloid B-protein (AB) Folding.
322-328 BibTeX
- Latifa Douali, Matt Ernst, John Miller, Michel Dupuis:
Melting Free Energies of DNA Duplexes with oxidized Base Residues and Abasic sites: A Molecular Dynamics Characterization.
329-337 BibTeX
- Keum-Young Sung:
The Use of Context-Sensitive Grammar For Modeling RNA Pseudoknots.
338-344 BibTeX
Metablomics,
Proteomic and Protein Function Prediction
- Jack Y. Yang, Mary Qu Yang:
Learning from Sequences with Determining Correlation between Transmembrane and Protein Disorder.
345-351 BibTeX
- George Runger, Kelly Canter, John Twist, David Rossi, Clifford Kirkham:
X-Ray Powder Diffraction Metrics.
352-359 BibTeX
- Jian Zhi Hu, Donald N. Rommereim, Robert A. Wind, Kevin R. Minard, Jesse A. Sears:
A Simple Approach for Obtaining High Resolution, High Sensitivity 1H NMR Metabolite Spectra of Biofluids with Limited Mass Supply.
360-366 BibTeX
- Sunshin Kim, Chung Rhee, Jungdo Choi, Yongje Chung, Keun Ho Ryu:
A New Algorithm to Predict the Active Sites Using Amino Acid Vectors and Biochemical features of Surface Patches.
367-372 BibTeX
Intelligent Drug Design
- Meena K. Sakharkar, Kishore R. Sakharkar, Vincent T. K. Chow:
Fusion genes as putative microbial drug targets in H. pylori.
373-377 BibTeX
- M. Emre Ozdemir, I. Halil Kavakli, Metin Türkay:
Structure-Based Design and Analysis of Cytochrome P450 Inhibitors for the Treatment of Prostate Cancer.
378-384 BibTeX
- Xiaohua Douglas Zhang, Amy S. Espeseth, Namjin Chung, Marc Ferrer:
Evaluation of a Novel Metric for Quality Control in an RNA Interference High Throughput Screening Assay.
385-390 BibTeX
- Marek Freindorf, Yihan Shao, Jing Kong, Thomas R. Furlani:
Combined QM/MM Studies of Binding Effect of Cytochrome P450cam to Putidaredoxin.
391-398 BibTeX
Ontology,
Semantics and Data Management Software
- Jack Horner:
Sensivitity of the maximum parsimony algorithm to missing data.
399-405 BibTeX
- Yijie Han:
Improving the Efficiency of Sorting by Reversals.
406-409 BibTeX
- Nicolás Guarín, Juan Ospina:
Analytical Solution of a Spatial Sir Epidemic Model with Memory Inside a Circular Habitat with Endemic Memory using CAS.
410-413 BibTeX
- Rana Hashmy:
Mapping Biological XML DTDs Using Ontology.
414-420 BibTeX
Algorithms and Models
Gene Networks:
Theory and Application
- Ai Li, Steve Horvath:
The Multi-Node Topological Overlap Measure For Gene Neighborhood Analysis.
445-450 BibTeX
- Andy Yip, Steve Horvath:
The Generalized Topological Overlap Matrix for Detecting Modules in Gene Networks.
451-457 BibTeX
- Wei Zhao, Paul Mischel, Marc Carlson, Bin Zhang, Stanley Nelson, Steve Horvath:
A Network-Based Gene Screening Approach For Improving the Validation Success of Microarrays.
458-464 BibTeX
- Steve Horvath, Jun Dong, Andy Yip:
The Relationship Between Intramodular Connectivity and Gene Significance in Co-Expression Networks.
465-471 BibTeX
- Frank Emmert-Streib, Matthias Dehmer:
Theoretical Bounds for the Number of Inferable Edges in Sparse Random Networks.
472-476 BibTeX
- Frank Emmert-Streib, Matthias Dehmer, Chris Seidel:
Influence of Prior Information on the Reconstruction of the Yeast Cell Cycle from Microarray Data.
477-482 BibTeX
- Jason E. Aten:
Learning Genetic and Gene Bayesian Networks with Hidden Variables: Bilayer Verification Algorithm.
483-489 BibTeX
- Jing Yu, Gabriel Helmlinger, Muriel Saulnier, Anna Georgieva:
Computational Inference of Compound-induced Anti-inflammatory Effects Across Time in an Adjuvant-induced Arthritis Rat Model.
490-495 BibTeX
- Alexander Mehler:
In Search of a Bridge Between Network Analysis in Computational Linguistics and Computational Biology - A Conceptual Note.
496-502 BibTeX
Late Papers
- Min He, Blythe H. Devlin, Mary Markert, Marcella Sarzotti, Thomas B. Kepler:
SpA: Web-accessible Spectratype Analysis: Application to Investigate the Development of TCR Diversity in a Patient with Complete DiGeorge Syndrome.
503-510 BibTeX
- Chi-Chiang Lee, Paul Marjoram:
Using Neural Nets to Estimate Evolutionary Parameters.
511-517 BibTeX
- Ke Liu, Mansur H. Samadzadeh:
PAC: Progressive Alignment with Consensus Sequences.
518-524 BibTeX
- Prashant Junankar, Dinesh P. Mital, Syed Haque, Shankar Srinivasan:
A Clinical Decision Support System For Managing Flexor Tendon Injuries.
525-528 BibTeX
- Sukanya Manna, Cheng-Yuan Liou:
Reverse Engineering Approach in Molecular Evolution: Simulation and Case Study with Enzyme Proteins.
529-533 BibTeX
- Bob Myers, Trevor I. Dix, Ross L. Coppel, David G. Green:
Polyome: A Learning System for Extracting Bioinformatic Data.
534-540 BibTeX
- Wei Cao, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Kentaro Shimizu:
Insight of the Signal Motif of GPI-(like)-anchored Proteins by using SVM.
541-546 BibTeX
- Joseph Gill, Legand L. Burge III, Zengjian Hu, William M. Southerland:
WebDock: A Structure-Based Drug Discovery Web Service.
547-548 BibTeX
- Madhumita Mahalanabis, Jason Blue, Nancy Haigwood:
AminoTrack: Automating the Entry and Analysis of Mutations in Multiple Protein Sequences Using a Spreadsheet Format.
549-555 BibTeX
- Pradeep Nair, Eugene John:
Performance of Sequence Alignment Bioinformatics Applications on General Purpose Processors: A Case Study.
556-559 BibTeX
- Mohammad Anwar, Marcel Turcotte:
An Approach to Selecting Putative RNA Motifs Using MDL Principle.
560-569 BibTeX
- Padmanabhan Mahadevan, Donald Seto:
Comparative genomics using web-based GeneOrder to determine synteny and to function as an annotation tool.
566-570 BibTeX
- Robert Fraser, Janice I. Glasgow:
Introducing Hippy: A Visualization Tool for Understanding the alpha-Helix Pair Interface.
571- BibTeX
Copyright © Sat May 16 22:59:32 2009
by Michael Ley (ley@uni-trier.de)