International Journal of Bioinformatics Research and Applications (IJBRA), Volume 3

Volume 3, Number 1, 2007

• Farid Parvini, Cyrus Shahabi:
  An algorithmic approach for static and dynamic gesture recognition utilising mechanical and biomechanical characteristics. 4-23
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• Michael D. Morse, Jignesh M. Patel, William I. Grosky:
  Efficient evaluation of radial queries using the target tree. 24-41
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• Lin Cheung, David W. Cheung, Ben Kao, Kevin Y. Yip, Michael K. Ng:
  On mining micro-array data by Order-Preserving Submatrix. 42-64
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• Bill Andreopoulos, Aijun An, Xiangji Huang, Xiaogang Wang:
  Finding molecular complexes through multiple layer clustering of protein interaction networks. 65-85
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• Jianjun Zhou, Jörg Sander, Guohui Lin:
  Efficient composite pattern finding from monad patterns. 86-99
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• Xin Zhu, Daming Wei:
  Computer simulation of intracardiac potential with whole-heart model. 100-122
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Volume 3, Number 2, 2007

• Yong Wang, Ling-Yun Wu, Luonan Chen, Xiang-Sun Zhang:
  Supervised classification of protein structures based on convex hull representation. 123-144
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• My T. Thai, David MacCallum, Ping Deng, Weili Wu:
  Decoding algorithms in pooling designs with inhibitors and error-tolerance. 145-152
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• Xue-wen Chen, Byron Gerlach, Dechang Chen, ZhenQiu Liu:
  Structural Risk Minimisation based gene expression profiling analysis. 153-169
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• Tie Wang, Guoliang Xue, Jeffrey W. Touchman:
  Modelling gene functional linkages using yeast microarray data. 170-186
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• Pradeep S. Nair, Eugene B. John:
  Analysing the performance of personal computers based on Intel microprocessors for sequence aligning bioinformatics applications. 187-205
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• Yuhang Wang, Siling Wang:
  A novel stationary wavelet denoising algorithm for array-based DNA Copy Number data. 206-222
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• Aiguo Du, Xiaohua Hu, Yi Pan:
  Prediction of the disulphide bridges in proteins using SVM. 223-233
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• Michal Brylinski, Leszek Konieczny, Irena Roterman:
  Is the protein folding an aim-oriented process? Human haemoglobin as example. 234-260
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Volume 3, Number 3, 2007

• Luciano A. Digiampietri, José de Jesús Pérez Alcázar, Claudia Bauzer Medeiros:
  An ontology-based framework for bioinformatics workflows. 268-285
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• Lavanya Dhanapalan, Jake Yue Chen:
  A case study of integrating protein interaction data using semantic web technology. 286-302
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• Katy Wolstencroft, Pinar Alper, Duncan Hull, Chris Wroe, Phillip W. Lord, Robert D. Stevens, Carole A. Goble:
  The _myGrid ontology: bioinformatics service discovery. 303-325
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• Andreas Kupfer, Silke Eckstein, Britta Störmann, Brigitte Mathiak:
  A database ontology for signal transduction pathways. 326-340
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• Deendayal Dinakarpandian, Tuanjie Tong, Yugyung Lee:
  A pragmatic approach to mapping the open biomedical ontologies. 341-365
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• Ramez Elmasri, Feng Ji, Jack Fu, Yiming Zhang, Zoe Raja:
  Modelling concepts and database implementation techniques for complex biological data. 366-388
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• René Witte, Thomas Kappler, Christopher J. O. Baker:
  Enhanced semantic access to the protein engineering literature using ontologies populated by text mining. 389-413
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• Illhoi Yoo, Xiaohua Hu, Il-Yeol Song:
  Biomedical ontology improves biomedical literature clustering performance: a comparison study. 414-428
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Volume 3, Number 4, 2007

• Brian Tripet, Megha Renuka Jayadev, Don Blow, Cao Nguyen, Robert S. Hodges, Krzysztof J. Cios:
  Proteomic data mining using predicted peptide chromatographic retention times. 431-445
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• Raja Loganantharaj, Vivek Philip:
  On predicting secondary structure transition. 446-455
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• Kimberly K. Baer, David A. McClellan:
  Molecular coevolution of the vertebrate cytochrome c. 456-470
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• Mark T. W. Ebbert, Wesley A. Beckstead, Timothy O'Connor, Mark J. Clement, David A. McClellan:
  Pharmacogenomics: analysing SNPs in the CYP2D6 gene using amino acid properties. 471-479
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• Shawn Martin, Zisu Mao, Linda S. Chan, Suraiya Rasheed:
  Inferring protein-protein interaction networks from protein complex data. 480-492
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• Hyrum Carroll, Perry Ridge, Mark J. Clement, Quinn Snell:
  Phylogenies scores for exhaustive searches and parsimony scores searches. 493-503
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• Srikar Chamala, Wesley A. Beckstead, Mark J. Rowe, David A. McClellan:
  Evolutionary selective pressure on three mitochondrial SNPs is consistent with their influence on metabolic efficiency in Pima Indians. 504-522
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• Abanish Singh, Cédric Feschotte, Nikola Stojanovic:
  A study of the repetitive structure and distribution of short motifs in human genomic sequences. 523-535
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• Yinglei Lai:
  Conservative adjustment of permutation p-values when the number of permutations is limited. 536-546
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