2008 |
15 | EE | Clifton Forlines,
Ryan H. Lilien:
Adapting a single-user, single-display molecular visualization application for use in a multi-user, multi-display environment.
AVI 2008: 367-371 |
14 | EE | Ivelin Georgiev,
Ryan H. Lilien,
Bruce Randall Donald:
The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles.
Journal of Computational Chemistry 29(10): 1527-1542 (2008) |
2006 |
13 | EE | Ivelin Georgiev,
Ryan H. Lilien,
Bruce Randall Donald:
Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design.
ISMB (Supplement of Bioinformatics) 2006: 174-183 |
12 | EE | Ivelin Georgiev,
Ryan H. Lilien,
Bruce Randall Donald:
A Novel Minimized Dead-End Elimination Criterion and Its Application to Protein Redesign in a Hybrid Scoring and Search Algorithm for Computing Partition Functions over Molecular Ensembles.
RECOMB 2006: 530-545 |
2005 |
11 | EE | Ramgopal R. Mettu,
Ryan H. Lilien,
Bruce Randall Donald:
High-throughput inference of protein-protein interfaces from unassigned NMR data.
ISMB (Supplement of Bioinformatics) 2005: 292-301 |
10 | EE | Ryan H. Lilien,
Brian W. Stevens,
Amy C. Anderson,
Bruce Randall Donald:
A Novel Ensemble-Based Scoring and Search Algorithm for Protein Redesign and Its Application to Modify the Substrate Specificity of the Gramicidin Synthetase A Phenylalanine Adenylation Enzyme.
Journal of Computational Biology 12(6): 740-761 (2005) |
2004 |
9 | EE | Ryan H. Lilien,
Brian W. Stevens,
Amy C. Anderson,
Bruce Randall Donald:
A novel ensemble-based scoring and search algorithm for protein redesign, and its application to modify the substrate specificity of the gramicidin synthetase a phenylalanine adenylation enzyme.
RECOMB 2004: 46-57 |
8 | EE | Christopher James Langmead,
Anthony K. Yan,
Ryan H. Lilien,
Lincong Wang,
Bruce Randall Donald:
A Polynomial-Time Nuclear Vector Replacement Algorithm for Automated NMR Resonance Assignments.
Journal of Computational Biology 11(2/3): 277-298 (2004) |
7 | EE | Richard E. Gillilan,
Ryan H. Lilien:
Optimization and dynamics of protein-protein complexes using B-splines.
Journal of Computational Chemistry 25(13): 1630-1646 (2004) |
2003 |
6 | EE | Lincong Wang,
Ramgopal R. Mettu,
Ryan H. Lilien,
Bruce Randall Donald:
An Exact Algorithm For Determining Protein Backbone Structure From NH Residual Dipolar Couplings.
CSB 2003: 611-612 |
5 | EE | Christopher James Langmead,
Anthony K. Yan,
Ryan H. Lilien,
Lincong Wang,
Bruce Randall Donald:
Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments.
RECOMB 2003: 176-187 |
4 | EE | Ryan H. Lilien,
Hany Farid,
Bruce Randall Donald:
Probabilistic Disease Classification of Expression-Dependent Proteomic Data from Mass Spectrometry of Human Serum.
Journal of Computational Biology 10(6): 925-946 (2003) |
2001 |
3 | | Bruce Randall Donald,
Christopher Bailey-Kellogg,
Jack Kelley,
Ryan H. Lilien:
Physical Geometric Algorithms for Structural Molecular Biology.
ICRA 2001: 940-947 |
1999 |
2 | EE | Daniel P. Huttenlocher,
Ryan H. Lilien,
Clark F. Olson:
View-Based Recognition Using an Eigenspace Approximation to the Hausdorff Measure.
IEEE Trans. Pattern Anal. Mach. Intell. 21(9): 951-955 (1999) |
1996 |
1 | | Daniel P. Huttenlocher,
Ryan H. Lilien,
Clark F. Olson:
Object Recognition Using Subspace Methods.
ECCV (1) 1996: 536-545 |