| 2008 |
|---|
| 7 | EE | Jaroslaw Smieja,
Mohammad Jamaluddin,
Allan R. Brasier,
Marek Kimmel:
Model-based analysis of interferon-beta induced signaling pathway.
Bioinformatics 24(20): 2363-2369 (2008) |
| 2007 |
|---|
| 6 | EE | Krzysztof Fujarewicz,
Marek Kimmel,
Tomasz Lipniacki,
Andrzej Swierniak:
Adjoint Systems for Models of Cell Signaling Pathways and their Application to Parameter Fitting.
IEEE/ACM Trans. Comput. Biology Bioinform. 4(3): 322-335 (2007) |
| 5 | EE | Brian Y. Chen,
Drew H. Bryant,
Viacheslav Fofanov,
David M. Kristensen,
Amanda E. Cruess,
Marek Kimmel,
Olivier Lichtarge,
Lydia E. Kavraki:
Cavity Scaling: Automated Refinement of Cavity-Aware motifs in protein Function Prediction.
J. Bioinformatics and Computational Biology 5(2a): 353-382 (2007) |
| 4 | EE | Brian Y. Chen,
Viacheslav Fofanov,
Drew H. Bryant,
Bradley D. Dodson,
David M. Kristensen,
Andreas Martin Lisewski,
Marek Kimmel,
Olivier Lichtarge,
Lydia E. Kavraki:
The MASH Pipeline for Protein Function Prediction and an Algorithm for the Geometric Refinement of 3D Motifs.
Journal of Computational Biology 14(6): 791-816 (2007) |
| 2006 |
|---|
| 3 | EE | Brian Y. Chen,
Viacheslav Fofanov,
Drew H. Bryant,
Bradley D. Dodson,
David M. Kristensen,
Andreas Martin Lisewski,
Marek Kimmel,
Olivier Lichtarge,
Lydia E. Kavraki:
Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction.
RECOMB 2006: 500-515 |
| 2005 |
|---|
| 2 | EE | Brian Y. Chen,
Viacheslav Fofanov,
David M. Kristensen,
Marek Kimmel,
Olivier Lichtarge,
Lydia E. Kavraki:
Algorithms for Structural Comparison and Statistical Analysis of 3D Protein Motifs.
Pacific Symposium on Biocomputing 2005 |
| 1 | EE | Bo Peng,
Marek Kimmel:
simuPOP: a forward-time population genetics simulation environment.
Bioinformatics 21(18): 3686-3687 (2005) |
