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Jaap Heringa

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2008
23EEPavol Jancura, Jaap Heringa, Elena Marchiori: Divide, Align and Full-Search for Discovering Conserved Protein Complexes. EvoBIO 2008: 71-82
22EEElzbieta Krepska, Nicola Bonzanni, K. Anton Feenstra, Wan Fokkink, Thilo Kielmann, Henri E. Bal, Jaap Heringa: Design Issues for Qualitative Modelling of Biological Cells with Petri Nets. FMSB 2008: 48-62
21EEPavol Jancura, Jaap Heringa, Elena Marchiori: Dividing Protein Interaction Networks by Growing Orthologous Articulations. PRIB 2008: 187-200
20EEKai Ye, K. Anton Feenstra, Jaap Heringa, Adriaan P. IJzerman, Elena Marchiori: Multi-RELIEF: a method to recognize specificity determining residues from multiple sequence alignments using a Machine-Learning approach for feature weighting. Bioinformatics 24(1): 18-25 (2008)
19EEWalter Pirovano, K. Anton Feenstra, Jaap Heringa: PRALINETM: a strategy for improved multiple alignment of transmembrane proteins. Bioinformatics 24(4): 492-497 (2008)
2007
18EEMarius C. Codrea, Connie R. Jimenez, Sander Piersma, Jaap Heringa, Elena Marchiori: Robust Peak Detection and Alignment of nanoLC-FT Mass Spectrometry Data. EvoBIO 2007: 35-46
17EEMarius C. Codrea, Connie R. Jimenez, Jaap Heringa, Elena Marchiori: Tools for computational processing of LC-MS datasets: A user's perspective. Computer Methods and Programs in Biomedicine 86(3): 281-290 (2007)
16EEK. Anton Feenstra, Walter Pirovano, Klaas Krab, Jaap Heringa: Sequence harmony: detecting functional specificity from alignments. Nucleic Acids Research 35(Web-Server-Issue): 495-498 (2007)
2006
15EERadek Szklarczyk, Jaap Heringa: AuberGene - a sensitive genome alignment tool. Bioinformatics 22(12): 1431-1436 (2006)
2005
14EEKuang Lin, Victor A. Simossis, William R. Taylor, Jaap Heringa: A simple and fast secondary structure prediction method using hidden neural networks. Bioinformatics 21(2): 152-159 (2005)
13EERichard A. George, Kuang Lin, Jaap Heringa: Scooby-domain: prediction of globular domains in protein sequence. Nucleic Acids Research 33(Web-Server-Issue): 160-163 (2005)
12EEVictor A. Simossis, Jaap Heringa: PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information. Nucleic Acids Research 33(Web-Server-Issue): 289-294 (2005)
2004
11EERadek Szklarczyk, Jaap Heringa: Tracking repeats using significance and transitivity. ISMB/ECCB (Supplement of Bioinformatics) 2004: 311-317
10EEVictor A. Simossis, Jaap Heringa: The influence of gapped positions in multiple sequence alignments on secondary structure prediction methods. Computational Biology and Chemistry 28(5-6): 351-366 (2004)
2003
9EEJohn W. Romein, Jaap Heringa, Henri E. Bal: A Million-Fold Speed Improvement in Genomic Repeats Detection. SC 2003: 20
8EEKuang Lin, Jens Kleinjung, William R. Taylor, Jaap Heringa: Testing homology with Contact Accepted mutatiOn (CAO): a contact-based Markov model of protein evolution. Computational Biology and Chemistry 27(2): 93-102 (2003)
7EEVictor A. Simossis, Jaap Heringa: The PRALINE online server: optimising progressive multiple alignment on the web. Computational Biology and Chemistry 27(4-5): 511-519 (2003)
2002
6 Jens Kleinjung, Nigel Douglas, Jaap Heringa: Parallelized multiple alignment. Bioinformatics 18(9): 1270-1271 (2002)
5EEJaap Heringa: Local Weighting Schemes for Protein Multiple Sequence Alignment. Computers & Chemistry 26(5): 459-477 (2002)
2001
4EEJaap Heringa: Post-genome Informatics: Minoru Kanehisa, Oxford University Press, Oxford, 2000, 148 pages. Computers & Chemistry 25(4): 425-426 (2001)
2000
3EEDavid D. Pollock, Jaap Heringa: RECOMB98. Computational Molecular Biology: Pre- and Post-genomics, March 22-25, 1998, New York. Computers & Chemistry 24(1): 133-134 (2000)
1999
2EEJaap Heringa: Two Strategies for Sequence Comparison: Profile-preprocessed and Secondary Structure-induced Multiple Alignment. Computers & Chemistry 23(3-4): 341-364 (1999)
1994
1EEJaap Heringa: The Evolution and Recognition of Protein Sequence Repeats. Computers & Chemistry 18(3): 233-243 (1994)

Coauthor Index

1Henri E. Bal [9] [22]
2Nicola Bonzanni [22]
3Marius C. Codrea [17] [18]
4Nigel Douglas [6]
5K. Anton Feenstra [16] [19] [20] [22]
6Wan Fokkink [22]
7Richard A. George [13]
8Adriaan P. IJzerman [20]
9Pavol Jancura [21] [23]
10Connie R. Jimenez [17] [18]
11Thilo Kielmann [22]
12Jens Kleinjung [6] [8]
13Klaas Krab [16]
14Elzbieta Krepska [22]
15Kuang Lin [8] [13] [14]
16Elena Marchiori [17] [18] [20] [21] [23]
17Sander Piersma [18]
18Walter Pirovano [16] [19]
19David D. Pollock [3]
20John W. Romein [9]
21Victor A. Simossis [7] [10] [12] [14]
22Radek Szklarczyk [11] [15]
23William R. Taylor [8] [14]
24Kai Ye [20]

Colors in the list of coauthors

Copyright © Sun May 17 03:24:02 2009 by Michael Ley (ley@uni-trier.de)