Runsheng Chen

2008
12	EE	Xiang Chen, Simin He, Dongbo Bu, Fa Zhang, Zhiyong Wang, Runsheng Chen, Wen Gao: FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space. Bioinformatics 24(18): 1994-2001 (2008)
11	EE	Shunmin He, Changning Liu, Geir Skogerbø, Haitao Zhao, Jie Wang, Tao Liu, Baoyan Bai, Yi Zhao, Runsheng Chen: NONCODE v2.0: decoding the non-coding. Nucleic Acids Research 36(Database-Issue): 170-172 (2008)
2007
10	EE	Xiang Chen, Simin He, Dong-Bo Bu, Runsheng Chen, Wen Gao: A Flexible Stem-Based Local Search Algorithm for Predicting RNA Secondary Structures Including Pseudoknots. BIBE 2007: 411-417
9	EE	Chungong Yu, Yu Lin, Shiwei Sun, Jinjin Cai, Jingfen Zhang, Dongbo Bu, Zhuo Zhang, Runsheng Chen: An Iterative Algorithm to Quantify Factors Influencing peptide Fragmentation during Tandem Mass Spectrometry. J. Bioinformatics and Computational Biology 5(2a): 297-311 (2007)
2006
8	EE	Zhuo Zhang, Shiwei Sun, Xiaopeng Zhu, Suhua Chang, Xiaofei Liu, Chungong Yu, Dongbo Bu, Runsheng Chen: A novel scoring schema for peptide identification by searching protein sequence databases using tandem mass spectrometry data. BMC Bioinformatics 7: 222 (2006)
7	EE	Yong Zhang, Shaojuan Li, Geir Skogerbø, Zhihua Zhang, Xiaopeng Zhu, Zefeng Zhang, Shiwei Sun, Hongchao Lu, Baochen Shi, Runsheng Chen: Phylophenetic properties of metabolic pathway topologies as revealed by global analysis. BMC Bioinformatics 7: 252 (2006)
6	EE	Xiangfeng Wang, Hang He, Lei Li, Runsheng Chen, Xing Wang Deng, Songgang Li: NMPP: a user-customized NimbleGen microarray data processing pipeline. Bioinformatics 22(23): 2955-2957 (2006)
5	EE	Tao Wu, Jie Wang, Changning Liu, Yong Zhang, Baochen Shi, Xiaopeng Zhu, Zhihua Zhang, Geir Skogerbø, Lan Chen, Hongchao Lu, Yi Zhao, Runsheng Chen: NPInter: the noncoding RNAs and protein related biomacromolecules interaction database. Nucleic Acids Research 34(Database-Issue): 150-152 (2006)
2005
4	EE	Jingfen Zhang, Wen Gao, Jinjin Cai, Simin He, Rong Zeng, Runsheng Chen: Predicting Molecular Formulas of Fragment Ions with Isotope Patterns in Tandem Mass Spectra. IEEE/ACM Trans. Comput. Biology Bioinform. 2(3): 217-230 (2005)
3	EE	Changning Liu, Baoyan Bai, Geir Skogerbø, Lun Cai, Wei Deng, Yong Zhang, Dongbo Bu, Yi Zhao, Runsheng Chen: NONCODE: an integrated knowledge database of non-coding RNAs. Nucleic Acids Research 33(Database-Issue): 112-115 (2005)
2004
2	EE	Yong Zhang, Zhihua Zhang, Lunjiang Ling, Baochen Shi, Runsheng Chen: Conservation analysis of small RNA genes in Escherichia coli. Bioinformatics 20(5): 599-603 (2004)
1995
1		Jian Sun, Wen-Yuan Song, Li-Huang Zhu, Runsheng Chen: Analysis of tRNA Gene Sequences by Neural Network. Journal of Computational Biology 2(3): 409-416 (1995)

Coauthor Index

1	Baoyan Bai	[3] [11]
2	Dong-Bo Bu	[10]
3	Dongbo Bu	[3] [8] [9] [12]
4	Jinjin Cai	[4] [9]
5	Lun Cai	[3]
6	Suhua Chang	[8]
7	Lan Chen	[5]
8	Xiang Chen	[10] [12]
9	Wei Deng	[3]
10	Xing Wang Deng	[6]
11	Wen Gao	[4] [10] [12]
12	Hang He	[6]
13	Shunmin He	[11]
14	Simin He	[4] [10] [12]
15	Lei Li	[6]
16	Shaojuan Li	[7]
17	Songgang Li	[6]
18	Yu Lin	[9]
19	Lunjiang Ling	[2]
20	Changning Liu	[3] [5] [11]
21	Tao Liu	[11]
22	Xiaofei Liu	[8]
23	Hongchao Lu	[5] [7]
24	Baochen Shi	[2] [5] [7]
25	Geir Skogerbø	[3] [5] [7] [11]
26	Wen-Yuan Song	[1]
27	Jian Sun	[1]
28	Shiwei Sun	[7] [8] [9]
29	Jie Wang	[5] [11]
30	Xiangfeng Wang	[6]
31	Zhiyong Wang	[12]
32	Tao Wu	[5]
33	Chungong Yu	[8] [9]
34	Rong Zeng	[4]
35	Fa Zhang	[12]
36	Jingfen Zhang	[4] [9]
37	Yong Zhang	[2] [3] [5] [7]
38	Zefeng Zhang	[7]
39	Zhihua Zhang	[2] [5] [7]
40	Zhuo Zhang	[8] [9]
41	Haitao Zhao	[11]
42	Yi Zhao	[3] [5] [11]
43	Li-Huang Zhu	[1]
44	Xiaopeng Zhu	[5] [7] [8]