Journal of Bioinformatics and Computational Biology, Volume 6

Volume 6, Number 1, February 2008

• Narayanan Raghupathy, Rose Hoberman, Dannie Durand:
  Two Plus Two Does not Equal Three: Statistical Tests for Multiple genome Comparison. 1-22
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• Andrew Wei Xu:
  The Distribution of Distances between Randomly Constructed genomes: Generating Function, Expectation, Variance and Limits. 23-36
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• M. Stissing, Thomas Mailund, Christian N. S. Pedersen, Gerth Stølting Brodal, Rolf Fagerberg:
  Computing the All-Pairs Quartet Distance on a Set of Evolutionary Trees. 37-50
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• Minghui Jiang, Ying Xu, Binhai Zhu:
  Protein Structure-structure Alignment with Discrete FrÉchet Distance. 51-64
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• V. Choi, Y. Huang, Vy Lam, D. Potter, Reinhard C. Laubenbacher, Karen Duca:
  Using Formal Concept Analysis for microarray Data Comparison. 65-75
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• Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles Lajoie:
  Complexities and Algorithms for Glycan Sequencing Using Tandem Mass Spectrometry. 77-91
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• Ján Manuch, Daya Ram Gaur:
  Fitting protein Chains to cubic Lattice is NP-Complete. 93-106
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• Yury V. Bukhman, Moyez Dharsee, Rob M. Ewing, Peter Chu, Thodoros Topaloglou, Thierry Le Bihan, Theo Goh, Henry Duewel, Ian I. Stewart, Jacek R. Wisniewski, Nancy F. Ng:
  Design and Analysis of Quantitative Differential Proteomics Investigations Using LC-MS Technology. 107-123
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• S. Tewari, Jonathan Arnold, Suchendra M. Bhandarkar:
  Likelihood of a Particular Order of Genetic Markers and the Construction of Genetic Maps. 125-162
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• Xijiang Miao, Peter J. Waddell, Homayoun Valafar:
  Tali: Local Alignment of protein Structures Using Backbone Torsion Angles. 163-181
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• Yonggang Lu, Jing He, Charlie E. M. Strauss:
  Deriving Topology and Sequence Alignment for the Helix Skeleton in Low-Resolution protein Density Maps. 183-201
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• Cao Nguyen, Michael Mannino, Katheleen J. Gardiner, Krzysztof J. Cios:
  CLusFCM: an Algorithm for Predicting protein Functions Using homologies and protein Interactions. 203-222
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• Jianwen Fang, Yinghua Dong, Todd D. Williams, Gerald H. Lushington:
  Feature Selection in Validating Mass Spectrometry Database Search Results. 223-240
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• Jing Li, Tao Jiang:
  A Survey on Haplotyping Algorithms for Tightly Linked Markers. 241-259
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Volume 6, Number 2, April 2008

• Ao Yuan, Wenqing He:
  Semiparametric Clustering Method for microarray Data Analysis. 261-282
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• Feng Cui, Robert L. Jernigan, Zhijun Wu:
  Knowledge-Based versus experimentally Acquired Distance and Angle Constraints for NMR Structure Refinement. 283-300
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• Lev Klebanov, Xing Qiu, Andrei Yakovlev:
  Testing Differential Expression in Nonoverlapping gene Pairs: a New Perspective for the Empirical Bayes Method. 301-316
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• José Osorio y Fortéa, Éric Prina, Thierry Lang, Geneviève Milon, Clarisse Davory, Jean-Yves Coppée, Béatrice Regnault:
  Affygcqc: a Web-Based Interface to Detect Outlying GeneChips with Extreme studentized Deviate Tests. 317-334
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• Aleksandar Poleksic, Mark A. Fienup, Joseph F. Danzer, Derek A. Debe:
  A Different Look at the Quality of Modeled Three-Dimensional protein Structures. 335-345
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• Sheng Wang, Wei-Mou Zheng:
  ClEPaps: Fast Pair Alignment of protein Structures Based on conformational Letters. 347-366
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• Mario Huerta, Juan Cedano, Enrique Querol:
  Analysis of Nonlinear Relations between Expression Profiles by the Principal Curves of Oriented-Points Approach. 367-386
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• Zoi I. Litou, Pantelis G. Bagos, Konstantinos D. Tsirigos, Theodore D. Liakopoulos, Stavros J. Hamodrakas:
  Prediction of Cell Wall Sorting Signals in Gram-Positive bacteria with a Hidden Markov Model: Application to Complete genomes. 387-401
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• Rafal Pokrzywa:
  New Method for yeast Identification Using Burrows-wheeler Transform. 403-413
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