Yuto Komeiji

2009
8	EE	Yuto Komeiji, Takeshi Ishikawa, Yuji Mochizuki, Hiroshi Yamataka, Tatsuya Nakano: Fragment Molecular Orbital method-based Molecular Dynamics (FMO-MD) as a simulator for chemical reactions in explicit solvation. Journal of Computational Chemistry 30(1): 40-50 (2009)
2008
7	EE	Bryan M. B. VanSchouwen, Heather L. Gordon, Stuart M. Rothstein, Yuto Komeiji, Kaori Fukuzawa, Shigenori Tanaka: Water-mediated interactions in the CRP-cAMP-DNA complex: Does water mediate sequence-specific binding at the DNA primary-kink site? Computational Biology and Chemistry 32(3): 149-158 (2008)
2007
6	EE	Yuto Komeiji, Toyokazu Ishida, Dmitri G. Fedorov, Kazuo Kitaura: Change in a protein's electronic structure induced by an explicit solvent: An ab initio fragment molecular orbital study of ubiquitin. Journal of Computational Chemistry 28(10): 1750-1762 (2007)
5	EE	Kaori Fukuzawa, Yuto Komeiji, Yuji Mochizuki, Akifumi Kato, Tatsuya Nakano, Shigenori Tanaka: Intra- and intermolecular interactions between cyclic-AMP receptor protein and DNA: Ab initio fragment molecular orbital study. Journal of Computational Chemistry 28(13): 2237-2239 (2007)
2006
4	EE	Kaori Fukuzawa, Yuto Komeiji, Yuji Mochizuki, Akifumi Kato, Tatsuya Nakano, Shigenori Tanaka: Intra- and intermolecular interactions between cyclic-AMP receptor protein and DNA: Ab initio fragment molecular orbital study. Journal of Computational Chemistry 27(8): 948-960 (2006)
2005
3	EE	Tadashi Nemoto, Dmitri G. Fedorov, Masami Uebayasi, Kenji Kanazawa, Kazuo Kitaura, Yuto Komeiji: Ab initio fragment molecular orbital (FMO) method applied to analysis of the ligand-protein interaction in a pheromone-binding protein. Computational Biology and Chemistry 29(6): 434-439 (2005)
2001
2		Yuto Komeiji, Makoto Haraguchi, Umpei Nagashima: Parallel molecular dynamics simulation of a protein. Parallel Computing 27(8): 977-987 (2001)
1997
1	EE	Yuto Komeiji, Masami Uebayasi, Ryo Takata, Akihiro Shimizu, Keiji Itsukashi, Makoto Taiji: Fast and accurate molecular dynamics simulation of a protein using a special-purpose computer. Journal of Computational Chemistry 18(12): 1546-1563 (1997)

Coauthor Index

1	Dmitri G. Fedorov	[3] [6]
2	Kaori Fukuzawa	[4] [5] [7]
3	Heather L. Gordon	[7]
4	Makoto Haraguchi	[2]
5	Toyokazu Ishida	[6]
6	Takeshi Ishikawa	[8]
7	Keiji Itsukashi	[1]
8	Kenji Kanazawa	[3]
9	Akifumi Kato	[4] [5]
10	Kazuo Kitaura	[3] [6]
11	Yuji Mochizuki	[4] [5] [8]
12	Umpei Nagashima	[2]
13	Tatsuya Nakano	[4] [5] [8]
14	Tadashi Nemoto	[3]
15	Stuart M. Rothstein	[7]
16	Akihiro Shimizu	[1]
17	Makoto Taiji	[1]
18	Ryo Takata	[1]
19	Shigenori Tanaka	[4] [5] [7]
20	Masami Uebayasi	[1] [3]
21	Bryan M. B. VanSchouwen	[7]
22	Hiroshi Yamataka	[8]