| 2008 |
| 14 | | Himanshu Grover,
Jonathan L. Lustgarten,
Shyam Visweswaran,
Vanathi Gopalakrishnan:
Improving Peptide Identification via Validation with Intensity-based Modeling of Tandem Mass Spectra.
BCBGC 2008: 56-63 |
| 13 | | Jonathan L. Lustgarten,
Shyam Visweswaran,
Himanshu Grover,
Vanathi Gopalakrishnan:
An Evaluation of Discretization Methods for Learning Rules from Biomedical Datasets.
BIOCOMP 2008: 527-532 |
| 2007 |
| 12 | EE | Yan Liu,
Jaime G. Carbonell,
Vanathi Gopalakrishnan,
Peter Weigele:
Protein Quaternary Fold Recognition Using Conditional Graphical Models.
IJCAI 2007: 937-945 |
| 2006 |
| 11 | EE | Vanathi Gopalakrishnan,
Philip Ganchev,
Srikanth Ranganathan,
Robert Bowser:
Rule Learning for Disease-Specific Biomarker Discovery from Clinical Proteomic Mass Spectra.
BioDM 2006: 93-105 |
| 10 | EE | Yan Liu,
Jaime G. Carbonell,
Peter Weigele,
Vanathi Gopalakrishnan:
Protein Fold Recognition Using Segmentation Conditional Random Fields (SCRFs).
Journal of Computational Biology 13(2): 394-406 (2006) |
| 2005 |
| 9 | EE | Yan Liu,
Jaime G. Carbonell,
Peter Weigele,
Vanathi Gopalakrishnan:
Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition.
RECOMB 2005: 408-422 |
| 2004 |
| 8 | EE | Yan Liu,
Jaime G. Carbonell,
Judith Klein-Seetharaman,
Vanathi Gopalakrishnan:
Context sensitive vocabulary and its application in protein secondary structure prediction.
SIGIR 2004: 538-539 |
| 7 | EE | Xinghua Lu,
Chengxiang Zhai,
Vanathi Gopalakrishnan,
Bruce G. Buchanan:
Automatic annotation of protein motif function with Gene Ontology terms.
BMC Bioinformatics 5: 122 (2004) |
| 6 | EE | Yan Liu,
Jaime G. Carbonell,
Judith Klein-Seetharaman,
Vanathi Gopalakrishnan:
Comparison of probabilistic combination methods for protein secondary structure prediction.
Bioinformatics 20(17): 3099-3107 (2004) |
| 2000 |
| 5 | | Vanathi Gopalakrishnan,
Bruce G. Buchanan,
John M. Rosenberg:
Intelligent Aids for Parallel Experiment Planning and Macromolecular Crystallization.
ISMB 2000: 171-182 |
| 1998 |
| 4 | EE | Vanathi Gopalakrishnan,
Bruce G. Buchanan:
Representing and Learning Temporal Relationships among Experimental Variables.
TIME 1998: 148-155 |
| 1996 |
| 3 | | Vanathi Gopalakrishnan:
Inducing Design Biases that Characterize Successful Experimentation in Weak-Theory Domains: TIPS.
AAAI/IAAI, Vol. 2 1996: 1391 |
| 1994 |
| 2 | | Vanathi Gopalakrishnan,
Daniel N. Hennessy,
Bruce G. Buchanan,
Devika Subramanian:
The Crystallographer's Assistant.
AAAI 1994: 1451 |
| 1 | | Daniel N. Hennessy,
Vanathi Gopalakrishnan,
Bruce G. Buchanan,
John M. Rosenberg,
Devika Subramanian:
Induction of Rules for Biological Macromolecular Crystallization.
ISMB 1994: 179-187 |