2007 |
15 | EE | Pablo Minguez,
Fátima Al-Shahrour,
David Montaner,
Joaquín Dopazo:
Functional profiling of microarray experiments using text-mining derived bioentities.
Bioinformatics 23(22): 3098-3099 (2007) |
14 | EE | Marc A. Martí-Renom,
Ursula Pieper,
Mallur S. Madhusudhan,
Andrea Rossi,
Narayanan Eswar,
Fred P. Davis,
Fátima Al-Shahrour,
Joaquín Dopazo,
Andrej Sali:
DBAli tools: mining the protein structure space.
Nucleic Acids Research 35(Web-Server-Issue): 393-397 (2007) |
13 | EE | Lucía Conde,
David Montaner,
Jordi Burguet-Castell,
Joaquín Tárraga,
Ignacio Medina,
Fátima Al-Shahrour,
Joaquín Dopazo:
ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling.
Nucleic Acids Research 35(Web-Server-Issue): 81-85 (2007) |
12 | EE | Fátima Al-Shahrour,
Pablo Minguez,
Joaquín Tárraga,
Ignacio Medina,
Eva Alloza,
David Montaner,
Joaquín Dopazo:
FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments.
Nucleic Acids Research 35(Web-Server-Issue): 91-96 (2007) |
2006 |
11 | EE | Fátima Al-Shahrour,
Pablo Minguez,
Joaquín Tárraga,
David Montaner,
Eva Alloza,
Juan M. Vaquerizas,
Lucía Conde,
Christian Blaschke,
Javier Vera,
Joaquín Dopazo:
BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.
Nucleic Acids Research 34(Web-Server-Issue): 472-476 (2006) |
10 | EE | David Montaner,
Joaquín Tárraga,
Jaime Huerta-Cepas,
Jordi Burguet-Castell,
Juan M. Vaquerizas,
Lucía Conde,
Pablo Minguez,
Javier Vera,
Sach Mukherjee,
Joan Valls,
Miguel A. G. Pujana,
Eva Alloza,
Javier Herrero,
Fátima Al-Shahrour,
Joaquín Dopazo:
Next station in microarray data analysis: GEPAS.
Nucleic Acids Research 34(Web-Server-Issue): 486-491 (2006) |
2005 |
9 | EE | Fátima Al-Shahrour,
Ramón Díaz-Uriarte,
Joaquín Dopazo:
Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information.
Bioinformatics 21(13): 2988-2993 (2005) |
8 | EE | Fátima Al-Shahrour,
Pablo Minguez,
Juan M. Vaquerizas,
Lucía Conde,
Joaquín Dopazo:
BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments.
Nucleic Acids Research 33(Web-Server-Issue): 460-464 (2005) |
7 | EE | Juan M. Vaquerizas,
Lucía Conde,
Patricio Yankilevich,
Amaya Cabezón,
Pablo Minguez,
Ramón Díaz-Uriarte,
Fátima Al-Shahrour,
Javier Herrero,
Joaquín Dopazo:
GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data.
Nucleic Acids Research 33(Web-Server-Issue): 616-620 (2005) |
2004 |
6 | | Javier Herrero,
Juan M. Vaquerizas,
Fátima Al-Shahrour,
Lucía Conde,
Álvaro Mateos,
Javier Santoyo,
Ramón Díaz-Uriarte,
Joaquín Dopazo:
New Challenges in Gene Expression Data Analysis and the Extended GEPAS.
Spanish Bioinformatics Conference 2004: 1-5 |
5 | | Lucía Conde,
Juan M. Vaquerizas,
Javier Santoyo,
Fátima Al-Shahrour,
Joaquín Dopazo:
Finding SNPs with Putative Phenotypic Effect at Transcriptional Level.
Spanish Bioinformatics Conference 2004: 157-160 |
4 | EE | Fátima Al-Shahrour,
Ramón Díaz-Uriarte,
Joaquín Dopazo:
FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes.
Bioinformatics 20(4): (2004) |
3 | | Lucía Conde,
Juan M. Vaquerizas,
Javier Santoyo,
Fátima Al-Shahrour,
Sergio Ruiz-Llorente,
Mercedes Robledo,
Joaquín Dopazo:
PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level.
Nucleic Acids Research 32(Web-Server-Issue): 242-248 (2004) |
2 | | Javier Herrero,
Juan M. Vaquerizas,
Fátima Al-Shahrour,
Lucía Conde,
Álvaro Mateos,
Javier Santoyo,
Ramón Díaz-Uriarte,
Joaquín Dopazo:
New challenges in gene expression data analysis and the extended GEPAS.
Nucleic Acids Research 32(Web-Server-Issue): 485-491 (2004) |
2003 |
1 | | Javier Herrero,
Fátima Al-Shahrour,
Ramón Díaz-Uriarte,
Álvaro Mateos,
Juan M. Vaquerizas,
Javier Santoyo,
Joaquín Dopazo:
GEPAS: a web-based resource for microarray gene expression data analysis.
Nucleic Acids Research 31(13): 3461-3467 (2003) |