| 2008 |
| 25 | EE | Deepak Bandyopadhyay,
Dimitris K. Agrafiotis:
A self-organizing algorithm for molecular alignment and pharmacophore development.
Journal of Computational Chemistry 29(6): 965-982 (2008) |
| 2007 |
| 24 | EE | Fangqiang Zhu,
Dimitris K. Agrafiotis:
Self-organizing superimposition algorithm for conformational sampling.
Journal of Computational Chemistry 28(7): 1234-1239 (2007) |
| 2006 |
| 23 | EE | Sergei Izrailev,
Fangqiang Zhu,
Dimitris K. Agrafiotis:
A distance geometry heuristic for expanding the range of geometries sampled during conformational search.
Journal of Computational Chemistry 27(16): 1962-1969 (2006) |
| 2005 |
| 22 | EE | Walter Cedeño,
Dimitris K. Agrafiotis:
A Comparison of Particle Swarms Techniques for the Development of Quantitative Structure-Activity Relationship Models for Drug Design.
CSB Workshops 2005: 322-331 |
| 2003 |
| 21 | EE | Dimitris K. Agrafiotis,
Huafeng Xu:
A Geodesic Framework for Analyzing Molecular Similarities.
Journal of Chemical Information and Computer Sciences 43(2): 475-484 (2003) |
| 20 | EE | Huafeng Xu,
Sergei Izrailev,
Dimitris K. Agrafiotis:
Conformational Sampling by Self-Organization.
Journal of Chemical Information and Computer Sciences 43(4): 1186-1191 (2003) |
| 19 | EE | Huafeng Xu,
Dimitris K. Agrafiotis:
Nearest Neighbor Search in General Metric Spaces Using a Tree Data Structure with a Simple Heuristic.
Journal of Chemical Information and Computer Sciences 43(6): 1933-1941 (2003) |
| 18 | EE | Dimitris K. Agrafiotis:
Stochastic proximity embedding.
Journal of Computational Chemistry 24(10): 1215-1221 (2003) |
| 17 | | Walter Cedeño,
Dimitris K. Agrafiotis:
Using particle swarms for the development of QSAR models based on K-nearest neighbor and kernel regression.
Journal of Computer-Aided Molecular Design 17(2-4): 255-263 (2003) |
| 2002 |
| 16 | EE | Dimitris K. Agrafiotis,
Dmitrii N. Rassokhin:
A Fractal Approach for Selecting an Appropriate Bin Size for Cell-Based Diversity Estimation.
Journal of Chemical Information and Computer Sciences 42(1): 116-122 (2002) |
| 15 | EE | Dimitris K. Agrafiotis,
Walter Cedeño,
Victor S. Lobanov:
On the Use of Neural Network Ensembles in QSAR and QSPR.
Journal of Chemical Information and Computer Sciences 42(4): 903-911 (2002) |
| 14 | EE | Dimitris K. Agrafiotis:
Multiobjective optimization of combinatorial libraries.
Journal of Computer-Aided Molecular Design 16(5-6): 335-356 (2002) |
| 2001 |
| 13 | EE | Dimitris K. Agrafiotis:
Multiobjective optimization of combinatorial libraries.
IBM Journal of Research and Development 45(3): 545- (2001) |
| 12 | EE | Dimitris K. Agrafiotis:
A Constant Time Algorithm for Estimating the Diversity of Large Chemical Libraries.
Journal of Chemical Information and Computer Sciences 41(1): 159-167 (2001) |
| 11 | EE | Sergei Izrailev,
Dimitris K. Agrafiotis:
A Novel Method for Building Regression Tree Models for QSAR Based on Artificial Ant Colony Systems.
Journal of Chemical Information and Computer Sciences 41(1): 176-180 (2001) |
| 10 | EE | Dimitris K. Agrafiotis,
Dmitrii N. Rassokhin:
Design and Prioritization of Plates for High-Throughput Screening.
Journal of Chemical Information and Computer Sciences 41(3): 798-805 (2001) |
| 9 | EE | Dimitris K. Agrafiotis,
Victor S. Lobanov:
Multidimensional scaling of combinatorial libraries without explicit enumeration.
Journal of Computational Chemistry 22(14): 1712-1722 (2001) |
| 8 | EE | Dmitrii N. Rassokhin,
Victor S. Lobanov,
Dimitris K. Agrafiotis:
Nonlinear mapping of massive data sets by fuzzy clustering and neural networks.
Journal of Computational Chemistry 22(4): 373-386 (2001) |
| 7 | EE | Dimitris K. Agrafiotis,
Dmitrii N. Rassokhin,
Victor S. Lobanov:
Multidimensional scaling and visualization of large molecular similarity tables.
Journal of Computational Chemistry 22(5): 488-500 (2001) |
| 2000 |
| 6 | EE | Victor S. Lobanov,
Dimitris K. Agrafiotis:
Stochastic Similarity Selections from Large Combinatorial Libraries.
Journal of Chemical Information and Computer Sciences 40(2): 460-470 (2000) |
| 5 | EE | Dimitris K. Agrafiotis,
Victor S. Lobanov:
Ultrafast Algorithm for Designing Focused Combinational Arrays.
Journal of Chemical Information and Computer Sciences 40(4): 1030-1038 (2000) |
| 4 | EE | Dimitris K. Agrafiotis,
Victor S. Lobanov:
Nonlinear Mapping Networks.
Journal of Chemical Information and Computer Sciences 40(6): 1356-1362 (2000) |
| 1999 |
| 3 | EE | Dimitris K. Agrafiotis,
Victor S. Lobanov:
An Efficient Implementation of Distance-Based Diversity Measures Based on k-d Trees.
Journal of Chemical Information and Computer Sciences 39(1): 51-58 (1999) |
| 1997 |
| 2 | EE | Dimitris K. Agrafiotis:
On the Use of Information Theory for Assessing Molecular Diversity.
Journal of Chemical Information and Computer Sciences 37(3): 576-580 (1997) |
| 1 | EE | Dimitris K. Agrafiotis:
Stochastic Algorithms for Maximizing Molecular Diversity.
Journal of Chemical Information and Computer Sciences 37(5): 841-851 (1997) |