International Journal of Bioinformatics Research and Applications (IJBRA), Volume 5

Volume 5, Number 1, 2009

• Jamal Alhiyafi, Cavitha Sabesan, Shiyong Lu, Jeffrey L. Ram:
  RECOMBFLOW: a scientific workflow environment for Intragenomic Gene Conversion analysis in bacterial genomes, including the pathogen Streptococcus pyogenes. 1-19
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• Abdur R. Sikder, Albert Y. Zomaya:
  Analysis of protein phosphorylation site predictors with an independent dataset. 20-37
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• Jingli Wu, Jianxin Wang, Jianer Chen:
  A practical algorithm for multiplex PCR primer set selection. 38-49
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• Fang-Xiang Wu, Zhonghang Xia, Lei Mu:
  Finding Significantly Expressed genes from time-course expression profiles. 50-63
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• Ovidiu Daescu, Jun Luo:
  Stabbing balls and simplifying proteins. 64-80
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• Israel M. Martinez-Perez, Karl-Heinz Zimmermann, Zoya Ignatova:
  An autonomous DNA model for finite state automata. 81-96
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• Joong Chae Na, Kangho Roh, Alberto Apostolico, Kunsoo Park:
  Alignment of biological sequences with quality scores. 97-113
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Volume 5, Number 2, 2009

• Alain Goriely, Sebastien Neukirch, Andrew Hausrath:
  Polyhelices through n points. 118-132
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• Manoelito C. Dos Santos Jr., Alex G. Taranto, Sandra A. De Assis, Aristoteles Goes-Neto:
  Homology modelling of pyrophosphosrylase, enzyme involved in chitin pathway of Moniliophthora perniciosa. 133-153
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• Ana Luiza Vivan, Rafael A. Caceres, Luiz Augusto Basso, Diógenes Santiago Santos, Walter F. de Azevedo Jr.:
  Structural studies of PNP from Toxoplasma gondii. 154-162
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• Gerardo Valdisio R. Viana, Fernando A. C. Gomes, C. E. Ferreira, Cláudio Nogueira de Meneses:
  Parallelisation of a multi-neighbourhood local search heuristic for a phylogeny problem. 163-177
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• Renata C. Ferreira, Francisco Bosco, Marcelo R. S. Briones:
  Scaling properties of transcription profiles in gene networks. 178-186
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• Ya-Ju Fan, Wanpracha Art Chaovalitwongse, Chang-Chia Liu, Rajesh C. Sachdeo, Leonidas D. Iasemidis, Panos M. Pardalos:
  Optimisation and data mining techniques for the screening of epileptic patients. 187-196
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• Rubem P. Mondaini:
  Modelling biomolecular structure with geodesic curves through ordered sets of atom sites. 197-206
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• Selma T. Milagre, Carlos Dias Maciel, Jose Carlos Pereira, Adriano A. Pereira:
  Fuzzy cluster stability analysis with missing values using resampling. 207-223
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• Thomas K. F. Wong, Tak Wah Lam, P. Y. Chan, Siu-Ming Yiu:
  Correcting short reads with high error rates for improved sequencing result. 224-237
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