2009 |
12 | EE | Edgar Luttmann,
Daniel L. Ensign,
Vaidyanathan Vishal,
Mike Houston,
Noam Rimon,
Jeppe Øland,
Guha Jayachandran,
Mark Friedrichs,
Vijay S. Pande:
Accelerating molecular dynamic simulation on the cell processor and Playstation 3.
Journal of Computational Chemistry 30(2): 268-274 (2009) |
11 | EE | Mark S. Friedrichs,
Peter Eastman,
Vaidyanathan Vishal,
Mike Houston,
Scott Legrand,
Adam L. Beberg,
Daniel L. Ensign,
Christopher M. Bruns,
Vijay S. Pande:
Accelerating molecular dynamic simulation on graphics processing units.
Journal of Computational Chemistry 30(6): 864-872 (2009) |
2008 |
10 | EE | Luca Monticelli,
Eric J. Sorin,
D. Peter Tieleman,
Vijay S. Pande,
Giorgio Colombo:
Molecular simulation of multistate peptide dynamics: A comparison between microsecond timescale sampling and multiple shorter trajectories.
Journal of Computational Chemistry 29(11): 1740-1752 (2008) |
9 | EE | Alex Robertson,
Edgar Luttmann,
Vijay S. Pande:
Effects of long-range electrostatic forces on simulated protein folding kinetics.
Journal of Computational Chemistry 29(5): 694-700 (2008) |
2007 |
8 | EE | Adam L. Beberg,
Vijay S. Pande:
Storage@home: Petascale Distributed Storage.
IPDPS 2007: 1-6 |
7 | EE | Peter M. Kasson,
Vijay S. Pande:
Predicting Structure and Dynamics of Loosely-Ordered Protein Complexes: Influenza Hemagglutinin Fusion Peptide.
Pacific Symposium on Biocomputing 2007: 40-50 |
6 | EE | Peter M. Kasson,
Afra Zomorodian,
Sanghyun Park,
Nina Singhal,
Leonidas J. Guibas,
Vijay S. Pande:
Persistent voids: a new structural metric for membrane fusion.
Bioinformatics 23(14): 1753-1759 (2007) |
5 | EE | Erich Elsen,
Vaidyanathan Vishal,
Mike Houston,
Vijay S. Pande,
Pat Hanrahan,
Eric Darve:
N-Body Simulations on GPUs
CoRR abs/0706.3060: (2007) |
2006 |
4 | EE | Erich Elsen,
Mike Houston,
Vaidyanathan Vishal,
Eric Darve,
Pat Hanrahan,
Vijay S. Pande:
Poster reception - N-Body simulation on GPUs.
SC 2006: 188 |
2005 |
3 | EE | Sanghyun Park,
Randall J. Radmer,
Teri E. Klein,
Vijay S. Pande:
A new set of molecular mechanics parameters for hydroxyproline and its use in molecular dynamics simulations of collagen-like peptides.
Journal of Computational Chemistry 26(15): 1612-1616 (2005) |
2 | EE | Eric J. Sorin,
Vijay S. Pande:
Empirical force-field assessment: The interplay between backbone torsions and noncovalent term scaling.
Journal of Computational Chemistry 26(7): 682-690 (2005) |
2003 |
1 | EE | Peter M. Kasson,
Vijay S. Pande:
Computational Simulation of Lipid Bilayer Reorientation at Gaps.
CSB 2003: 464-467 |