Suzanne M. Paley

2008
23	EE	Ron Caspi, Hartmut Foerster, Carol A. Fulcher, Pallavi Kaipa, Markus Krummenacker, Mario Latendresse, Suzanne M. Paley, Seung Yon Rhee, Alexander G. Shearer, Christophe Tissier, Thomas C. Walk, Peifen Zhang, Peter D. Karp: The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Research 36(Database-Issue): 623-631 (2008)
2006
22	EE	Ron Caspi, Hartmut Foerster, Carol A. Fulcher, Rebecca Hopkinson, John Ingraham, Pallavi Kaipa, Markus Krummenacker, Suzanne M. Paley, John Pick, Seung Yon Rhee, Christophe Tissier, Peifen Zhang, Peter D. Karp: MetaCyc: a multiorganism database of metabolic pathways and enzymes. Nucleic Acids Research 34(Database-Issue): 511-516 (2006)
2005
21	EE	Markus Krummenacker, Suzanne M. Paley, Lukas A. Mueller, Thomas Yan, Peter D. Karp: Querying and computing with BioCyc databases. Bioinformatics 21(16): 3454-3455 (2005)
20	EE	Ingrid M. Keseler, Julio Collado-Vides, Socorro Gama-Castro, John Ingraham, Suzanne M. Paley, Ian T. Paulsen, Martín Peralta-Gil, Peter D. Karp: EcoCyc: a comprehensive database resource for Escherichia coli. Nucleic Acids Research 33(Database-Issue): 334-337 (2005)
2004
19	EE	Peter D. Karp, Suzanne M. Paley, Cynthia J. Krieger, Peifen Zhang: An Evidence Ontology for Use in Pathway/Genome Databases. Pacific Symposium on Biocomputing 2004: 190-201
18		Cynthia J. Krieger, Peifen Zhang, Lukas A. Mueller, Alfred Wang, Suzanne M. Paley, Martha Arnaud, John Pick, Seung Yon Rhee, Peter D. Karp: MetaCyc: a multiorganism database of metabolic pathways and enzymes. Nucleic Acids Research 32(Database-Issue): 438-442 (2004)
2002
17		Peter D. Karp, Suzanne M. Paley, Pedro Romero: The Pathway Tools software. ISMB 2002: 225-232
16		Suzanne M. Paley, Peter D. Karp: Evaluation of computational metabolic-pathway predictions for Helicobacter pylori. Bioinformatics 18(5): 715-724 (2002)
15		Peter D. Karp, Monica Riley, Milton H. Saier Jr., Ian T. Paulsen, Julio Collado-Vides, Suzanne M. Paley, Alida Pellegrini-Toole, César Bonavides-Martínez, Socorro Gama-Castro: The EcoCyc Database. Nucleic Acids Research 30(1): 56-58 (2002)
14		Peter D. Karp, Monica Riley, Suzanne M. Paley, Alida Pellegrini-Toole: The MetaCyc Database. Nucleic Acids Research 30(1): 59-61 (2002)
2001
13		Peter D. Karp, Suzanne M. Paley, Jingchun Zhu: Database verification studies of SWISS-PROT and GenBank. Bioinformatics 17(6): 526-532 (2001)
2000
12		Peter D. Karp, Monica Riley, Milton H. Saier Jr., Ian T. Paulsen, Suzanne M. Paley, Alida Pellegrini-Toole: The EcoCyc and MetaCyc databases. Nucleic Acids Research 28(1): 56-59 (2000)
1999
11		Peter D. Karp, Vinay K. Chaudhri, Suzanne M. Paley: A Collaborative Environment for Authoring Large Knowledge Bases. J. Intell. Inf. Syst. 13(3): 155-194 (1999)
10		Peter D. Karp, Monica Riley, Suzanne M. Paley, Alida Pellegrini-Toole, Markus Krummenacker: Eco Cyc: encyclopedia of Escherichia coli genes and metabolism. Nucleic Acids Research 27(1): 55-58 (1999)
1998
9		Peter D. Karp, Monica Riley, Suzanne M. Paley, Alida Pellegrini-Toole, Markus Krummenacker: EcoCyc: Encyclopedia of Escherichia coli genes and metabolism. Nucleic Acids Research 26(1): 50-53 (1998)
1997
8		Suzanne M. Paley, John D. Lowrance, Peter D. Karp: A Generic Knowledge-Base Browser and Editor. AAAI/IAAI 1997: 1045-1051
7		Peter D. Karp, Monica Riley, Suzanne M. Paley, Alida Pellegrini-Toole, Markus Krummenacker: EcoCyc: Enyclopedia of Escherichia coli Genes and Metabolism. Nucleic Acids Research 25(1): 43-51 (1997)
1996
6		Peter D. Karp, Christos A. Ouzounis, Suzanne M. Paley: HinCyc: A Knowledge Base of the Complete Genome and Metabolic Pathways of H. influenzae. ISMB 1996: 116-124
5		Peter D. Karp, Suzanne M. Paley: Integrated Access to Metabolic and Genomic Data. Journal of Computational Biology 3(1): 191- (1996)
4		Peter D. Karp, Monica Riley, Suzanne M. Paley, Alida Pellegrini-Toole: EcoCyc: an encyclopedia of Escherichia coli genes and metabolism. Nucleic Acids Research 24(1): 32-39 (1996)
1995
3		Peter D. Karp, Suzanne M. Paley: Knowledge Representation in the Large. IJCAI (1) 1995: 751-758
1994
2	EE	Peter D. Karp, Suzanne M. Paley, Ira Greenberg: A Storage System for Scalable Knowledge Representation. CIKM 1994: 97-104
1		Peter D. Karp, Suzanne M. Paley: Representations of Metabolic Knowledge: Pathways. ISMB 1994: 203-211

Coauthor Index

1	Martha Arnaud	[18]
2	César Bonavides-Martínez	[15]
3	Ron Caspi	[22] [23]
4	Vinay K. Chaudhri	[11]
5	Julio Collado-Vides	[15] [20]
6	Hartmut Foerster	[22] [23]
7	Carol A. Fulcher	[22] [23]
8	Socorro Gama-Castro	[15] [20]
9	Ira Greenberg	[2]
10	Rebecca Hopkinson	[22]
11	John Ingraham	[20] [22]
12	Pallavi Kaipa	[22] [23]
13	Peter D. Karp	[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23]
14	Ingrid M. Keseler	[20]
15	Cynthia J. Krieger	[18] [19]
16	Markus Krummenacker	[7] [9] [10] [21] [22] [23]
17	Mario Latendresse	[23]
18	John D. Lowrance	[8]
19	Lukas A. Mueller	[18] [21]
20	Christos A. Ouzounis	[6]
21	Ian T. Paulsen	[12] [15] [20]
22	Alida Pellegrini-Toole	[4] [7] [9] [10] [12] [14] [15]
23	Martín Peralta-Gil	[20]
24	John Pick	[18] [22]
25	Seung Yon Rhee	[18] [22] [23]
26	Monica Riley	[4] [7] [9] [10] [12] [14] [15]
27	Pedro Romero	[17]
28	Milton H. Saier Jr.	[12] [15]
29	Alexander G. Shearer	[23]
30	Christophe Tissier	[22] [23]
31	Thomas C. Walk	[23]
32	Alfred Wang	[18]
33	Thomas Yan	[21]
34	Peifen Zhang	[18] [19] [22] [23]
35	Jingchun Zhu	[13]