| 2008 |
|---|
| 20 | EE | Zuwairie Ibrahim,
John A. Rose,
Akira Suyama,
Marzuki Khalid:
Experimental implementation and analysis of a DNA computing readout method based on real-time PCR with TaqMan probes.
Natural Computing 7(2): 277-286 (2008) |
| 2007 |
|---|
| 19 | EE | Zuwairie Ibrahim,
Muhammad Faiz Mohamed Saaid,
Ali S. Paramita,
Akira Suyama,
John A. Rose:
An improved readout method of molecular computation based on real-time PCR implemented on DNA Engine Opticon 2 System.
IEEE Congress on Evolutionary Computation 2007: 1829-1834 |
| 2006 |
|---|
| 18 | EE | Zuwairie Ibrahim,
John A. Rose,
Yusei Tsuboi,
Osamu Ono,
Marzuki Khalid:
A New Readout Approach in DNA Computing Based on Real-Time PCR with TaqMan Probes.
DNA 2006: 350-359 |
| 17 | EE | John A. Rose,
Ken Komiya,
Satsuki Yaegashi,
Masami Hagiya:
Displacement Whiplash PCR: Optimized Architecture and Experimental Validation.
DNA 2006: 393-403 |
| 16 | EE | Ken Komiya,
Satsuki Yaegashi,
Masami Hagiya,
Akira Suyama,
John A. Rose:
Experimental Validation of the Statistical Thermodynamic Model for Prediction of the Behavior of Autonomous Molecular Computers Based on DNA Hairpin Formation.
DNA 2006: 428-438 |
| 2005 |
|---|
| 15 | EE | John A. Rose:
The fidelity of the tag-antitag system: Characterization of the stringent temperature for robustness in the excess limit.
KES Journal 9(4): 285-292 (2005) |
| 2004 |
|---|
| 14 | EE | John A. Rose:
The Fidelity of the Tag-Antitag System III. Robustness in the Excess Limit: The Stringent Temperature.
KES 2004: 40-49 |
| 13 | EE | John A. Rose:
Equilibrium Modelling of Oligonucleotide Hybridization, Error, and Efficiency for DNA-Based Computational Systems.
KES 2004: 8-10 |
| 12 | EE | Max H. Garzon,
John A. Rose:
Editorial.
Natural Computing 3(4): 357-359 (2004) |
| 11 | EE | John A. Rose,
Akira Suyama:
Physical modeling of biomolecular computers: Models, limitations, and experimental validation.
Natural Computing 3(4): 411-426 (2004) |
| 10 | EE | John A. Rose,
Russell J. Deaton,
Akira Suyama:
Statistical thermodynamic analysis and designof DNA-based computers.
Natural Computing 3(4): 443-459 (2004) |
| 2003 |
|---|
| 9 | EE | John A. Rose,
Mitsunori Takano,
Masami Hagiya,
Akira Suyama:
A DNA Computing-based Genetic Program for In Vitro Protein Evolution via Constrained Pseudomodule Shuffling.
Genetic Programming and Evolvable Machines 4(2): 139-152 (2003) |
| 2002 |
|---|
| 8 | EE | Russell J. Deaton,
Junghuei Chen,
Hong Bi,
John A. Rose:
A Software Tool for Generating Non-crosshybridizing Libraries of DNA Oligonucleotides.
DNA 2002: 252-261 |
| 7 | EE | John A. Rose,
Mitsunori Takano,
Akira Suyama:
A PNA-mediated Whiplash PCR-based Program for In Vitro Protein Evolution.
DNA 2002: 47-60 |
| 6 | | Masami Hagiya,
John A. Rose,
Ken Komiya,
Kensaku Sakamoto:
Complexity analysis of the SAT engine: DNA algorithms as probabilistic algorithms.
Theor. Comput. Sci. 287(1): 59-71 (2002) |
| 2001 |
|---|
| 5 | EE | John A. Rose,
Russell J. Deaton,
Masami Hagiya,
Akira Suyama:
PNA-mediated Whiplash PCR.
DNA 2001: 104-116 |
| 4 | EE | John A. Rose,
Russell J. Deaton,
Masami Hagiya,
Akira Suyama:
The Fidelity of the Tag-Antitag System.
DNA 2001: 138-149 |
| 2000 |
|---|
| 3 | EE | John A. Rose,
Russell J. Deaton:
The Fidelity of Annealing-Ligation: A Theoretical Analysis.
DNA Computing 2000: 231-246 |
| 1998 |
|---|
| 2 | | Russell J. Deaton,
Max H. Garzon,
John A. Rose,
Donald R. Franceschetti,
Stanley Edward Stevens Jr.:
DNA Compunting: A Review.
Fundam. Inform. 35(1-4): 231-245 (1998) |
| 1997 |
|---|
| 1 | | Max H. Garzon,
Y. Gao,
John A. Rose,
R. C. Murphy,
Russell J. Deaton,
Donald R. Franceschetti,
Stanley Edward Stevens Jr.:
In Vitro Implementation of Finite-State Machines.
Workshop on Implementing Automata 1997: 56-74 |
