James R. Cole

2007
12	EE	James R. Cole, B. Chai, Ryan J. Farris, Q. Wang, A. S. Kulam-Syed-Mohideen, D. M. McGarrell, A. M. Bandela, E. Cardenas, George M. Garrity, James M. Tiedje: The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. Nucleic Acids Research 35(Database-Issue): 169-172 (2007)
2006
11		Qiang Xue, James R. Cole, Sakti Pramanik: Sequence Homology Search Based on Database Indexing Using the Profile Hidden Markov Model. BIBE 2006: 135-140
10	EE	Timothy G. Lilburn, Scott H. Harrison, James R. Cole, George M. Garrity: Computational aspects of systematic biology. Briefings in Bioinformatics 7(2): 186-195 (2006)
2005
9	EE	James R. Cole, B. Chai, Ryan J. Farris, Q. Wang, S. A. Kulam, D. M. McGarrell, George M. Garrity, James M. Tiedje: The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Research 33(Database-Issue): 294-296 (2005)
2003
8		John W. Urbance, James R. Cole, Paul Saxman, James M. Tiedje: BSD: the Biodegradative Strain Database. Nucleic Acids Research 31(1): 152-155 (2003)
7		James R. Cole, B. Chai, Terry L. Marsh, Ryan J. Farris, Q. Wang, S. A. Kulam, S. Chandra, D. M. McGarrell, Thomas M. Schmidt, George M. Garrity, James M. Tiedje: The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Research 31(1): 442-443 (2003)
2001
6		Bonnie L. Maidak, James R. Cole, Timothy G. Lilburn, Charles T. Parker Jr., Paul Saxman, Ryan J. Farris, George M. Garrity, Gary J. Olsen, Thomas M. Schmidt, James M. Tiedje: The RDP-II (Ribosomal Database Project). Nucleic Acids Research 29(1): 173-174 (2001)
5		Joel A. Klappenbach, Paul Saxman, James R. Cole, Thomas M. Schmidt: rrndb: the Ribosomal RNA Operon Copy Number Database. Nucleic Acids Research 29(1): 181-184 (2001)
2000
4		Bonnie L. Maidak, James R. Cole, Timothy G. Lilburn, Charles T. Parker Jr., Paul Saxman, Jason M. Stredwick, George M. Garrity, Bing Li, Gary J. Olsen, Sakti Pramanik, Thomas M. Schmidt, James M. Tiedje: The RDP (Ribosomal Database Project) continues. Nucleic Acids Research 28(1): 173-174 (2000)
1999
3		Bonnie L. Maidak, James R. Cole, Charles T. Parker Jr., George M. Garrity, Niels Larsen, Bing Li, Timothy G. Lilburn, Michael J. McCaughey, Gary J. Olsen, Ross A. Overbeek, Sakti Pramanik, Thomas M. Schmidt, James M. Tiedje, Carl R. Woese: A new version of the RDP (Ribosomal Database Project). Nucleic Acids Research 27(1): 171-173 (1999)
1996
2		Jin Kim, James R. Cole, Eric Torng, Sakti Pramanik: Inferring Relatedness of a Macromolecule to a Sequence Database Without Sequencing. ISMB 1996: 125-133
1		Jin Kim, James R. Cole, Sakti Pramanik: Alignment of possible secondary structures in multiple RNA sequences using simulated annealing. Computer Applications in the Biosciences 12(4): 259-267 (1996)

Coauthor Index

1	A. M. Bandela	[12]
2	E. Cardenas	[12]
3	B. Chai	[7] [9] [12]
4	S. Chandra	[7]
5	Ryan J. Farris	[6] [7] [9] [12]
6	George M. Garrity	[3] [4] [6] [7] [9] [10] [12]
7	Scott H. Harrison	[10]
8	Jin Kim	[1] [2]
9	Joel A. Klappenbach	[5]
10	S. A. Kulam	[7] [9]
11	A. S. Kulam-Syed-Mohideen	[12]
12	Niels Larsen	[3]
13	Bing Li	[3] [4]
14	Timothy G. Lilburn	[3] [4] [6] [10]
15	Bonnie L. Maidak	[3] [4] [6]
16	Terry L. Marsh	[7]
17	Michael J. McCaughey	[3]
18	D. M. McGarrell	[7] [9] [12]
19	Gary J. Olsen	[3] [4] [6]
20	Ross A. Overbeek	[3]
21	Charles T. Parker Jr.	[3] [4] [6]
22	Sakti Pramanik	[1] [2] [3] [4] [11]
23	Paul Saxman	[4] [5] [6] [8]
24	Thomas M. Schmidt	[3] [4] [5] [6] [7]
25	Jason M. Stredwick	[4]
26	James M. Tiedje	[3] [4] [6] [7] [8] [9] [12]
27	Eric Torng	[2]
28	John W. Urbance	[8]
29	Q. Wang	[7] [9] [12]
30	Carl R. Woese	[3]
31	Qiang Xue	[11]